miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23070 5' -56.5 NC_005178.1 + 34585 0.66 0.52463
Target:  5'- gGGGAGcUGGCCGGGCgagUCGGUGa- -3'
miRNA:   3'- -UCCUUaGCCGGCUCGacgAGCUACgu -5'
23070 5' -56.5 NC_005178.1 + 15613 0.66 0.513786
Target:  5'- cAGGcucaGGCCGAGCUGUUC-AUGg- -3'
miRNA:   3'- -UCCuuagCCGGCUCGACGAGcUACgu -5'
23070 5' -56.5 NC_005178.1 + 19412 0.66 0.503035
Target:  5'- cGGcgcgCaGCCGAGCUGCUCGGc--- -3'
miRNA:   3'- uCCuua-GcCGGCUCGACGAGCUacgu -5'
23070 5' -56.5 NC_005178.1 + 24950 0.66 0.496632
Target:  5'- gGGGAAUCGGUCcucgaagcgcuccaGGCgGCcgUCGAUGCGu -3'
miRNA:   3'- -UCCUUAGCCGGc-------------UCGaCG--AGCUACGU- -5'
23070 5' -56.5 NC_005178.1 + 15222 0.66 0.492383
Target:  5'- cGGAagGUCGGCgGAuaGCUGCgcacgaaGAUGCc -3'
miRNA:   3'- uCCU--UAGCCGgCU--CGACGag-----CUACGu -5'
23070 5' -56.5 NC_005178.1 + 13317 0.66 0.481836
Target:  5'- gAGGGG-C-GCCGGGCUGCUCGc-GCu -3'
miRNA:   3'- -UCCUUaGcCGGCUCGACGAGCuaCGu -5'
23070 5' -56.5 NC_005178.1 + 23491 0.67 0.46108
Target:  5'- ----cUCGGCCG-GCUGCUCaagGCAc -3'
miRNA:   3'- uccuuAGCCGGCuCGACGAGcuaCGU- -5'
23070 5' -56.5 NC_005178.1 + 29834 0.67 0.43086
Target:  5'- cAGGucuUCGGCCG-GCUccgaauagcGCUCGGUGa- -3'
miRNA:   3'- -UCCuu-AGCCGGCuCGA---------CGAGCUACgu -5'
23070 5' -56.5 NC_005178.1 + 11950 0.68 0.401832
Target:  5'- ----cUCGGCCGcucGUUGCUCGGcUGCAa -3'
miRNA:   3'- uccuuAGCCGGCu--CGACGAGCU-ACGU- -5'
23070 5' -56.5 NC_005178.1 + 18138 0.68 0.401832
Target:  5'- ------aGGCCGAGCaGCUCGGcUGCGc -3'
miRNA:   3'- uccuuagCCGGCUCGaCGAGCU-ACGU- -5'
23070 5' -56.5 NC_005178.1 + 12469 0.68 0.392436
Target:  5'- cGGuguagCGGCCGAGCUGgUCGcgcugGUGUc -3'
miRNA:   3'- uCCuua--GCCGGCUCGACgAGC-----UACGu -5'
23070 5' -56.5 NC_005178.1 + 5889 0.68 0.383184
Target:  5'- uAGGcuguUCGGUC-AGCUGCgCGGUGCGc -3'
miRNA:   3'- -UCCuu--AGCCGGcUCGACGaGCUACGU- -5'
23070 5' -56.5 NC_005178.1 + 36772 0.69 0.356311
Target:  5'- cGGAggUGGCUaGGCUGCUUGAUaGCc -3'
miRNA:   3'- uCCUuaGCCGGcUCGACGAGCUA-CGu -5'
23070 5' -56.5 NC_005178.1 + 6959 0.69 0.339146
Target:  5'- gAGGcAAUCGGCaUGAGCcGUUCGAccGCAg -3'
miRNA:   3'- -UCC-UUAGCCG-GCUCGaCGAGCUa-CGU- -5'
23070 5' -56.5 NC_005178.1 + 7766 0.7 0.276578
Target:  5'- --aAGUCGGCCGGGUUGUUCGcUGUu -3'
miRNA:   3'- uccUUAGCCGGCUCGACGAGCuACGu -5'
23070 5' -56.5 NC_005178.1 + 16263 0.71 0.255608
Target:  5'- cAGGAAgcgucgaaaggcUCGGCCGAGCcGUUCauggccauGAUGCGc -3'
miRNA:   3'- -UCCUU------------AGCCGGCUCGaCGAG--------CUACGU- -5'
23070 5' -56.5 NC_005178.1 + 22460 0.71 0.248914
Target:  5'- ----cUUGGCCGAGCgcuucaccaGCUCGGUGCGc -3'
miRNA:   3'- uccuuAGCCGGCUCGa--------CGAGCUACGU- -5'
23070 5' -56.5 NC_005178.1 + 2920 0.71 0.248914
Target:  5'- cGGccaGGUCGaGCCGcAGCUGCUCGcuAUGCu -3'
miRNA:   3'- uCC---UUAGC-CGGC-UCGACGAGC--UACGu -5'
23070 5' -56.5 NC_005178.1 + 27261 0.73 0.179461
Target:  5'- cAGGAcgUGccGCCGAGCUGCUCGAc--- -3'
miRNA:   3'- -UCCUuaGC--CGGCUCGACGAGCUacgu -5'
23070 5' -56.5 NC_005178.1 + 16880 0.8 0.065091
Target:  5'- cGGAGguagcgaGGCCGAGCUGCUCGgcGCc -3'
miRNA:   3'- uCCUUag-----CCGGCUCGACGAGCuaCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.