miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23072 3' -55.6 NC_005178.1 + 16742 0.66 0.580973
Target:  5'- gCAUGGCCgagcaaaCCGCGAGGGCGGccUCGu- -3'
miRNA:   3'- -GUACCGGgc-----GGCGUUUCUGCU--AGCuu -5'
23072 3' -55.6 NC_005178.1 + 34229 0.66 0.569683
Target:  5'- uGUGG-CCGUCGCAGgaauAGACGucgGUCGGGa -3'
miRNA:   3'- gUACCgGGCGGCGUU----UCUGC---UAGCUU- -5'
23072 3' -55.6 NC_005178.1 + 12796 0.66 0.558448
Target:  5'- aAUGGCCUugaggGCCGCGuGGugGGugagcugcucuUCGAAg -3'
miRNA:   3'- gUACCGGG-----CGGCGUuUCugCU-----------AGCUU- -5'
23072 3' -55.6 NC_005178.1 + 35183 0.67 0.492644
Target:  5'- --cGGCCagGCCGCAGucguGGACGAU-GAGa -3'
miRNA:   3'- guaCCGGg-CGGCGUU----UCUGCUAgCUU- -5'
23072 3' -55.6 NC_005178.1 + 15276 0.68 0.443688
Target:  5'- uCAUcGCCCGCCGCcuggcgggccagccuGGCGGUCGGc -3'
miRNA:   3'- -GUAcCGGGCGGCGuuu------------CUGCUAGCUu -5'
23072 3' -55.6 NC_005178.1 + 24004 0.68 0.430634
Target:  5'- -cUGaCCCGCCGCAuAGGCGAgcUgGAAg -3'
miRNA:   3'- guACcGGGCGGCGUuUCUGCU--AgCUU- -5'
23072 3' -55.6 NC_005178.1 + 17606 0.68 0.430634
Target:  5'- --cGGCCgcugugcguCGCCGUGGucuGACGGUCGAGu -3'
miRNA:   3'- guaCCGG---------GCGGCGUUu--CUGCUAGCUU- -5'
23072 3' -55.6 NC_005178.1 + 36064 0.68 0.420747
Target:  5'- -uUGGCCCGCUGguGGGcaACGGgugCGAc -3'
miRNA:   3'- guACCGGGCGGCguUUC--UGCUa--GCUu -5'
23072 3' -55.6 NC_005178.1 + 5491 0.69 0.383537
Target:  5'- gCGUGGCgCGCCGCuccaaccaacacgacAAGACcGUCGAGa -3'
miRNA:   3'- -GUACCGgGCGGCGu--------------UUCUGcUAGCUU- -5'
23072 3' -55.6 NC_005178.1 + 21236 0.69 0.382612
Target:  5'- --cGGCCgGCCGCAucaucGGCG-UCGAAc -3'
miRNA:   3'- guaCCGGgCGGCGUuu---CUGCuAGCUU- -5'
23072 3' -55.6 NC_005178.1 + 22274 0.69 0.364426
Target:  5'- -cUGGCCCGCCagGCGGcGGGCGAU-GAAg -3'
miRNA:   3'- guACCGGGCGG--CGUU-UCUGCUAgCUU- -5'
23072 3' -55.6 NC_005178.1 + 10088 0.69 0.364426
Target:  5'- aUAUGGCCCGgCGCAuguuccaGGUCGAGc -3'
miRNA:   3'- -GUACCGGGCgGCGUuucug--CUAGCUU- -5'
23072 3' -55.6 NC_005178.1 + 9221 0.69 0.364426
Target:  5'- --aGGCCCGCCGCu--GcACGAcuccgaagcaUCGAAg -3'
miRNA:   3'- guaCCGGGCGGCGuuuC-UGCU----------AGCUU- -5'
23072 3' -55.6 NC_005178.1 + 20100 0.7 0.329883
Target:  5'- aCAccGCCCgcGCCGCGAAGcUGAUCGAAg -3'
miRNA:   3'- -GUacCGGG--CGGCGUUUCuGCUAGCUU- -5'
23072 3' -55.6 NC_005178.1 + 21894 0.71 0.275389
Target:  5'- --cGGCCCGgCGCugGAAGACGuggCGAAg -3'
miRNA:   3'- guaCCGGGCgGCG--UUUCUGCua-GCUU- -5'
23072 3' -55.6 NC_005178.1 + 22540 0.72 0.261201
Target:  5'- --aGGCCCGCUGCAu-GGCGAugaugucuUCGAu -3'
miRNA:   3'- guaCCGGGCGGCGUuuCUGCU--------AGCUu -5'
23072 3' -55.6 NC_005178.1 + 6928 0.73 0.228337
Target:  5'- gGUGGCCCGCaGCAGccAGACGAaagccggCGAGg -3'
miRNA:   3'- gUACCGGGCGgCGUU--UCUGCUa------GCUU- -5'
23072 3' -55.6 NC_005178.1 + 16183 0.76 0.13778
Target:  5'- --gGGgCCGCCGCGAAGGCGuuGUUGAAg -3'
miRNA:   3'- guaCCgGGCGGCGUUUCUGC--UAGCUU- -5'
23072 3' -55.6 NC_005178.1 + 34162 0.77 0.106054
Target:  5'- -cUGGCCCGCaCGCGAauGGACGAggCGAGc -3'
miRNA:   3'- guACCGGGCG-GCGUU--UCUGCUa-GCUU- -5'
23072 3' -55.6 NC_005178.1 + 1388 1.06 0.000831
Target:  5'- aCAUGGCCCGCCGCAAAGACGAUCGAAc -3'
miRNA:   3'- -GUACCGGGCGGCGUUUCUGCUAGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.