miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23075 3' -54.7 NC_005178.1 + 2775 1.15 0.000255
Target:  5'- cGCAGCUGGCCCUGGUCGAAACCAACCg -3'
miRNA:   3'- -CGUCGACCGGGACCAGCUUUGGUUGG- -5'
23075 3' -54.7 NC_005178.1 + 21620 0.79 0.104426
Target:  5'- cGCAGCUcGUCCUGGUCGuccggguucaguugAAACCAGCUu -3'
miRNA:   3'- -CGUCGAcCGGGACCAGC--------------UUUGGUUGG- -5'
23075 3' -54.7 NC_005178.1 + 6749 0.78 0.125379
Target:  5'- --cGCcGGCCCaGGUCGAGGCCGcgACCg -3'
miRNA:   3'- cguCGaCCGGGaCCAGCUUUGGU--UGG- -5'
23075 3' -54.7 NC_005178.1 + 25993 0.78 0.125379
Target:  5'- -gAGCUGGCCCUGccaGUUGuugcguGCCGACCa -3'
miRNA:   3'- cgUCGACCGGGAC---CAGCuu----UGGUUGG- -5'
23075 3' -54.7 NC_005178.1 + 23683 0.77 0.144713
Target:  5'- gGCGgcGCUGGCCUUcgggucggGGUCGAAACCugcGACCu -3'
miRNA:   3'- -CGU--CGACCGGGA--------CCAGCUUUGG---UUGG- -5'
23075 3' -54.7 NC_005178.1 + 7767 0.77 0.153185
Target:  5'- gGCGGaguccaGUCCUGGUgCGAGGCCAACCg -3'
miRNA:   3'- -CGUCgac---CGGGACCA-GCUUUGGUUGG- -5'
23075 3' -54.7 NC_005178.1 + 32228 0.76 0.181351
Target:  5'- cGCcGCccugGGCcgCCUGGUCGA-GCCGACCg -3'
miRNA:   3'- -CGuCGa---CCG--GGACCAGCUuUGGUUGG- -5'
23075 3' -54.7 NC_005178.1 + 20390 0.74 0.23216
Target:  5'- -aAGCcGGCCCUGGaCGcccaggcGACCAACCu -3'
miRNA:   3'- cgUCGaCCGGGACCaGCu------UUGGUUGG- -5'
23075 3' -54.7 NC_005178.1 + 28517 0.73 0.251589
Target:  5'- cGCGGCauuGCuCCaGGUCGAAGCCGGCa -3'
miRNA:   3'- -CGUCGac-CG-GGaCCAGCUUUGGUUGg -5'
23075 3' -54.7 NC_005178.1 + 34988 0.73 0.251589
Target:  5'- cGC-GCUGGCCgaGG-CGccGACCAGCCu -3'
miRNA:   3'- -CGuCGACCGGgaCCaGCu-UUGGUUGG- -5'
23075 3' -54.7 NC_005178.1 + 9071 0.73 0.265273
Target:  5'- aGCAGCggaguaaGCCCUGGcugcauggCGGAuGCCGACCg -3'
miRNA:   3'- -CGUCGac-----CGGGACCa-------GCUU-UGGUUGG- -5'
23075 3' -54.7 NC_005178.1 + 17142 0.73 0.272338
Target:  5'- cGCAGCuUGGCCagguUGGUCGccugggcguccaGGGCCGGCUu -3'
miRNA:   3'- -CGUCG-ACCGGg---ACCAGC------------UUUGGUUGG- -5'
23075 3' -54.7 NC_005178.1 + 1436 0.72 0.326045
Target:  5'- cGCAGCcGGCCCgcgcuauaccUGGU-GAGugCAACUa -3'
miRNA:   3'- -CGUCGaCCGGG----------ACCAgCUUugGUUGG- -5'
23075 3' -54.7 NC_005178.1 + 5267 0.71 0.342768
Target:  5'- aGCAGUUGGCCgaGGcCGccACCGuucaggGCCg -3'
miRNA:   3'- -CGUCGACCGGgaCCaGCuuUGGU------UGG- -5'
23075 3' -54.7 NC_005178.1 + 1879 0.71 0.350492
Target:  5'- aGgAGUUGGCCCUGGUgcaggcUGAGgaguaucGCCAgGCCg -3'
miRNA:   3'- -CgUCGACCGGGACCA------GCUU-------UGGU-UGG- -5'
23075 3' -54.7 NC_005178.1 + 23456 0.71 0.351358
Target:  5'- aCGGCcagGGCgCCcGGcgCGAAGCCGGCCc -3'
miRNA:   3'- cGUCGa--CCG-GGaCCa-GCUUUGGUUGG- -5'
23075 3' -54.7 NC_005178.1 + 22183 0.71 0.368993
Target:  5'- gGCAGCUGGCCUaUGGcUCc--ACCGGCa -3'
miRNA:   3'- -CGUCGACCGGG-ACC-AGcuuUGGUUGg -5'
23075 3' -54.7 NC_005178.1 + 15571 0.71 0.368993
Target:  5'- -aAGCUGGCucacauCCUGaUCGAGGCCGAgCa -3'
miRNA:   3'- cgUCGACCG------GGACcAGCUUUGGUUgG- -5'
23075 3' -54.7 NC_005178.1 + 5944 0.7 0.378034
Target:  5'- cCAGgUGG-CCUGGaCGggGCgGACCa -3'
miRNA:   3'- cGUCgACCgGGACCaGCuuUGgUUGG- -5'
23075 3' -54.7 NC_005178.1 + 28658 0.7 0.387224
Target:  5'- --uGCUGGCCCagGGUCuGGAUguACCg -3'
miRNA:   3'- cguCGACCGGGa-CCAGcUUUGguUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.