miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23076 3' -61.6 NC_005178.1 + 3125 1.13 0.000064
Target:  5'- cGGAGAAGCGCAGCGCCCGCGCUGCCCa -3'
miRNA:   3'- -CCUCUUCGCGUCGCGGGCGCGACGGG- -5'
23076 3' -61.6 NC_005178.1 + 10337 0.8 0.02837
Target:  5'- cGGAGggGCGaAGCGCgCCGgGCUGCgCu -3'
miRNA:   3'- -CCUCuuCGCgUCGCG-GGCgCGACGgG- -5'
23076 3' -61.6 NC_005178.1 + 13316 0.79 0.031868
Target:  5'- cGAGggGCGCcgGGCuGCUCGCGCUGUCg -3'
miRNA:   3'- cCUCuuCGCG--UCG-CGGGCGCGACGGg -5'
23076 3' -61.6 NC_005178.1 + 21038 0.74 0.075507
Target:  5'- cGGGggGCGCGGCGUgCGUcgagGUUGCCg -3'
miRNA:   3'- cCUCuuCGCGUCGCGgGCG----CGACGGg -5'
23076 3' -61.6 NC_005178.1 + 9559 0.74 0.082203
Target:  5'- --cGAAGCGCgAGCGCgaugcccugcgCCGCGCUGCgCu -3'
miRNA:   3'- ccuCUUCGCG-UCGCG-----------GGCGCGACGgG- -5'
23076 3' -61.6 NC_005178.1 + 6238 0.73 0.089463
Target:  5'- ----cGGCGCGGCGCCagGCGCauaGCCCg -3'
miRNA:   3'- ccucuUCGCGUCGCGGg-CGCGa--CGGG- -5'
23076 3' -61.6 NC_005178.1 + 4226 0.72 0.105848
Target:  5'- cGAGAAacGCGCAGagGCCCGCGagaagcgcGCCCu -3'
miRNA:   3'- cCUCUU--CGCGUCg-CGGGCGCga------CGGG- -5'
23076 3' -61.6 NC_005178.1 + 19035 0.72 0.121615
Target:  5'- uGGAGAAucgggugcGCGCcGCGCCCcuucgccgcucGCGCUGCa- -3'
miRNA:   3'- -CCUCUU--------CGCGuCGCGGG-----------CGCGACGgg -5'
23076 3' -61.6 NC_005178.1 + 25715 0.71 0.131013
Target:  5'- uGGAGAAGCucgacagccuccagGC-GCGCCUGaauGCUGCCa -3'
miRNA:   3'- -CCUCUUCG--------------CGuCGCGGGCg--CGACGGg -5'
23076 3' -61.6 NC_005178.1 + 32248 0.71 0.143408
Target:  5'- uGGAGGucGGC-CAGUuccaGCUCGCGCcgGCCCu -3'
miRNA:   3'- -CCUCU--UCGcGUCG----CGGGCGCGa-CGGG- -5'
23076 3' -61.6 NC_005178.1 + 8162 0.7 0.147371
Target:  5'- cGGAGAuAGCaGCuGCGCUCGUagggGCUGCUg -3'
miRNA:   3'- -CCUCU-UCG-CGuCGCGGGCG----CGACGGg -5'
23076 3' -61.6 NC_005178.1 + 4710 0.7 0.155597
Target:  5'- uGGAGaAAGCGCugucGCGUaccuCCaCGUUGCCCg -3'
miRNA:   3'- -CCUC-UUCGCGu---CGCG----GGcGCGACGGG- -5'
23076 3' -61.6 NC_005178.1 + 1269 0.7 0.159433
Target:  5'- aGGAcaacccGAAGCgGCAGCGUCCGaaucgcucagagaCGCUGCUg -3'
miRNA:   3'- -CCU------CUUCG-CGUCGCGGGC-------------GCGACGGg -5'
23076 3' -61.6 NC_005178.1 + 31401 0.7 0.164237
Target:  5'- uGGcuGggGCGCGcGCGUUUggGCGCUGCCg -3'
miRNA:   3'- -CCu-CuuCGCGU-CGCGGG--CGCGACGGg -5'
23076 3' -61.6 NC_005178.1 + 12931 0.69 0.173305
Target:  5'- uGGAGGA-CGUGGCGCgCCagGUGCUGgCCg -3'
miRNA:   3'- -CCUCUUcGCGUCGCG-GG--CGCGACgGG- -5'
23076 3' -61.6 NC_005178.1 + 6879 0.69 0.17753
Target:  5'- cGGccuGggGCG-AGCGUCCGCccgucuucguccaGCUGCUCg -3'
miRNA:   3'- -CCu--CuuCGCgUCGCGGGCG-------------CGACGGG- -5'
23076 3' -61.6 NC_005178.1 + 26406 0.69 0.178005
Target:  5'- aGGGcGGCgGCcagGGCGCCCGCGCUgauguggauGCCa -3'
miRNA:   3'- cCUCuUCG-CG---UCGCGGGCGCGA---------CGGg -5'
23076 3' -61.6 NC_005178.1 + 22138 0.69 0.182817
Target:  5'- --uGAAGUuCGGCgccgaaGCCCGCGCUGCUg -3'
miRNA:   3'- ccuCUUCGcGUCG------CGGGCGCGACGGg -5'
23076 3' -61.6 NC_005178.1 + 20526 0.69 0.192788
Target:  5'- cGGcGAAGUG-GGCGCCCGUugaaGCUGUCa -3'
miRNA:   3'- -CCuCUUCGCgUCGCGGGCG----CGACGGg -5'
23076 3' -61.6 NC_005178.1 + 35186 0.69 0.192788
Target:  5'- cGAGAAGCGggcgauguaUAGCGUcaagCUGUGCuUGCCCg -3'
miRNA:   3'- cCUCUUCGC---------GUCGCG----GGCGCG-ACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.