Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23076 | 3' | -61.6 | NC_005178.1 | + | 22962 | 0.68 | 0.203233 |
Target: 5'- uGGugcuGAAGCGCguAGCGUgCGUGCUGgCa -3' miRNA: 3'- -CCu---CUUCGCG--UCGCGgGCGCGACgGg -5' |
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23076 | 3' | -61.6 | NC_005178.1 | + | 2925 | 0.69 | 0.19795 |
Target: 5'- aGGucGAGcCGCAGCuGCUCGCuaUGCUCa -3' miRNA: 3'- -CCucUUC-GCGUCG-CGGGCGcgACGGG- -5' |
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23076 | 3' | -61.6 | NC_005178.1 | + | 3032 | 0.69 | 0.19795 |
Target: 5'- aGGccGAGCGUGGCGCCCugGUGCcgaagGUCCg -3' miRNA: 3'- -CCucUUCGCGUCGCGGG--CGCGa----CGGG- -5' |
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23076 | 3' | -61.6 | NC_005178.1 | + | 20526 | 0.69 | 0.192788 |
Target: 5'- cGGcGAAGUG-GGCGCCCGUugaaGCUGUCa -3' miRNA: 3'- -CCuCUUCGCgUCGCGGGCG----CGACGGg -5' |
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23076 | 3' | -61.6 | NC_005178.1 | + | 35186 | 0.69 | 0.192788 |
Target: 5'- cGAGAAGCGggcgauguaUAGCGUcaagCUGUGCuUGCCCg -3' miRNA: 3'- cCUCUUCGC---------GUCGCG----GGCGCG-ACGGG- -5' |
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23076 | 3' | -61.6 | NC_005178.1 | + | 22138 | 0.69 | 0.182817 |
Target: 5'- --uGAAGUuCGGCgccgaaGCCCGCGCUGCUg -3' miRNA: 3'- ccuCUUCGcGUCG------CGGGCGCGACGGg -5' |
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23076 | 3' | -61.6 | NC_005178.1 | + | 26406 | 0.69 | 0.178005 |
Target: 5'- aGGGcGGCgGCcagGGCGCCCGCGCUgauguggauGCCa -3' miRNA: 3'- cCUCuUCG-CG---UCGCGGGCGCGA---------CGGg -5' |
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23076 | 3' | -61.6 | NC_005178.1 | + | 6879 | 0.69 | 0.17753 |
Target: 5'- cGGccuGggGCG-AGCGUCCGCccgucuucguccaGCUGCUCg -3' miRNA: 3'- -CCu--CuuCGCgUCGCGGGCG-------------CGACGGG- -5' |
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23076 | 3' | -61.6 | NC_005178.1 | + | 12931 | 0.69 | 0.173305 |
Target: 5'- uGGAGGA-CGUGGCGCgCCagGUGCUGgCCg -3' miRNA: 3'- -CCUCUUcGCGUCGCG-GG--CGCGACgGG- -5' |
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23076 | 3' | -61.6 | NC_005178.1 | + | 31401 | 0.7 | 0.164237 |
Target: 5'- uGGcuGggGCGCGcGCGUUUggGCGCUGCCg -3' miRNA: 3'- -CCu-CuuCGCGU-CGCGGG--CGCGACGGg -5' |
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23076 | 3' | -61.6 | NC_005178.1 | + | 1269 | 0.7 | 0.159433 |
Target: 5'- aGGAcaacccGAAGCgGCAGCGUCCGaaucgcucagagaCGCUGCUg -3' miRNA: 3'- -CCU------CUUCG-CGUCGCGGGC-------------GCGACGGg -5' |
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23076 | 3' | -61.6 | NC_005178.1 | + | 4710 | 0.7 | 0.155597 |
Target: 5'- uGGAGaAAGCGCugucGCGUaccuCCaCGUUGCCCg -3' miRNA: 3'- -CCUC-UUCGCGu---CGCG----GGcGCGACGGG- -5' |
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23076 | 3' | -61.6 | NC_005178.1 | + | 8162 | 0.7 | 0.147371 |
Target: 5'- cGGAGAuAGCaGCuGCGCUCGUagggGCUGCUg -3' miRNA: 3'- -CCUCU-UCG-CGuCGCGGGCG----CGACGGg -5' |
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23076 | 3' | -61.6 | NC_005178.1 | + | 32248 | 0.71 | 0.143408 |
Target: 5'- uGGAGGucGGC-CAGUuccaGCUCGCGCcgGCCCu -3' miRNA: 3'- -CCUCU--UCGcGUCG----CGGGCGCGa-CGGG- -5' |
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23076 | 3' | -61.6 | NC_005178.1 | + | 25715 | 0.71 | 0.131013 |
Target: 5'- uGGAGAAGCucgacagccuccagGC-GCGCCUGaauGCUGCCa -3' miRNA: 3'- -CCUCUUCG--------------CGuCGCGGGCg--CGACGGg -5' |
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23076 | 3' | -61.6 | NC_005178.1 | + | 19035 | 0.72 | 0.121615 |
Target: 5'- uGGAGAAucgggugcGCGCcGCGCCCcuucgccgcucGCGCUGCa- -3' miRNA: 3'- -CCUCUU--------CGCGuCGCGGG-----------CGCGACGgg -5' |
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23076 | 3' | -61.6 | NC_005178.1 | + | 4226 | 0.72 | 0.105848 |
Target: 5'- cGAGAAacGCGCAGagGCCCGCGagaagcgcGCCCu -3' miRNA: 3'- cCUCUU--CGCGUCg-CGGGCGCga------CGGG- -5' |
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23076 | 3' | -61.6 | NC_005178.1 | + | 6238 | 0.73 | 0.089463 |
Target: 5'- ----cGGCGCGGCGCCagGCGCauaGCCCg -3' miRNA: 3'- ccucuUCGCGUCGCGGg-CGCGa--CGGG- -5' |
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23076 | 3' | -61.6 | NC_005178.1 | + | 9559 | 0.74 | 0.082203 |
Target: 5'- --cGAAGCGCgAGCGCgaugcccugcgCCGCGCUGCgCu -3' miRNA: 3'- ccuCUUCGCG-UCGCG-----------GGCGCGACGgG- -5' |
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23076 | 3' | -61.6 | NC_005178.1 | + | 21038 | 0.74 | 0.075507 |
Target: 5'- cGGGggGCGCGGCGUgCGUcgagGUUGCCg -3' miRNA: 3'- cCUCuuCGCGUCGCGgGCG----CGACGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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