miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23076 5' -54.6 NC_005178.1 + 7740 0.66 0.597354
Target:  5'- cUGaAGAAGCGcCUGGCGGuccuccaGGGCGGAg- -3'
miRNA:   3'- -ACcUCUUCGU-GACCGUC-------CCCGUUUac -5'
23076 5' -54.6 NC_005178.1 + 6689 0.66 0.575506
Target:  5'- aGGGGGAGCGcCUGGaccGGGCGGc-- -3'
miRNA:   3'- aCCUCUUCGU-GACCgucCCCGUUuac -5'
23076 5' -54.6 NC_005178.1 + 12660 0.67 0.55271
Target:  5'- cGGccGgcGCGCUGGCGGGuGGCc---- -3'
miRNA:   3'- aCCu-CuuCGUGACCGUCC-CCGuuuac -5'
23076 5' -54.6 NC_005178.1 + 12092 0.67 0.541413
Target:  5'- gUGGAGuGGuCGCgUGGCGGGccuGGCcGAUGg -3'
miRNA:   3'- -ACCUCuUC-GUG-ACCGUCC---CCGuUUAC- -5'
23076 5' -54.6 NC_005178.1 + 9076 0.67 0.530193
Target:  5'- cGGAGuAAGCcCUGGCuGcauGGCGGAUGc -3'
miRNA:   3'- aCCUC-UUCGuGACCGuCc--CCGUUUAC- -5'
23076 5' -54.6 NC_005178.1 + 15335 0.67 0.530193
Target:  5'- aUGGAGuucGCcCUGGUAGGccGGCAAGg- -3'
miRNA:   3'- -ACCUCuu-CGuGACCGUCC--CCGUUUac -5'
23076 5' -54.6 NC_005178.1 + 22195 0.67 0.508019
Target:  5'- aUGGcuccaccGGCACUGGCgcauaaGGGGGCAGcucAUGg -3'
miRNA:   3'- -ACCucu----UCGUGACCG------UCCCCGUU---UAC- -5'
23076 5' -54.6 NC_005178.1 + 36104 0.68 0.444107
Target:  5'- gGGAGuacaugccgcccAGGUuggGCUGGCGGGuGCAGGUGg -3'
miRNA:   3'- aCCUC------------UUCG---UGACCGUCCcCGUUUAC- -5'
23076 5' -54.6 NC_005178.1 + 17281 0.69 0.433894
Target:  5'- cUGGAGGccaaAG-GCUGGUGGGGGCGucagauAGUGg -3'
miRNA:   3'- -ACCUCU----UCgUGACCGUCCCCGU------UUAC- -5'
23076 5' -54.6 NC_005178.1 + 8162 0.7 0.357411
Target:  5'- cGGAGAuagcagcuGCGCUcGUAGGGGCugcuGAUGc -3'
miRNA:   3'- aCCUCUu-------CGUGAcCGUCCCCGu---UUAC- -5'
23076 5' -54.6 NC_005178.1 + 3160 1.08 0.000694
Target:  5'- cUGGAGAAGCACUGGCAGGGGCAAAUGc -3'
miRNA:   3'- -ACCUCUUCGUGACCGUCCCCGUUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.