miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23077 3' -62.2 NC_005178.1 + 8670 0.66 0.27241
Target:  5'- cCAGCCGCGAccaGGUCuGGGUucGCgGUGaGGa -3'
miRNA:   3'- aGUCGGCGCU---CCAG-CCCG--CG-UAC-CCa -5'
23077 3' -62.2 NC_005178.1 + 8804 0.66 0.275149
Target:  5'- -gAGCCGCaccAGGUCGgcaagaaagucgcccGGCGCGUgccGGGUg -3'
miRNA:   3'- agUCGGCGc--UCCAGC---------------CCGCGUA---CCCA- -5'
23077 3' -62.2 NC_005178.1 + 18339 0.66 0.279299
Target:  5'- -uGGaCCGCGAGGUCcaGGaGCGCcUGGcGg -3'
miRNA:   3'- agUC-GGCGCUCCAG--CC-CGCGuACC-Ca -5'
23077 3' -62.2 NC_005178.1 + 21239 0.66 0.286326
Target:  5'- cCGGCCGCaucaucGGcGUCGaaccggacGGCGUGUGGGUg -3'
miRNA:   3'- aGUCGGCGc-----UC-CAGC--------CCGCGUACCCA- -5'
23077 3' -62.2 NC_005178.1 + 34596 0.66 0.27241
Target:  5'- gCGGCCGCGAGGaucgCGGGC-CAUc--- -3'
miRNA:   3'- aGUCGGCGCUCCa---GCCCGcGUAccca -5'
23077 3' -62.2 NC_005178.1 + 8855 0.68 0.216447
Target:  5'- gUCGGCCGCcaucuGGUCGGGgucuugaacaGCAUGGa- -3'
miRNA:   3'- -AGUCGGCGcu---CCAGCCCg---------CGUACCca -5'
23077 3' -62.2 NC_005178.1 + 24756 0.68 0.218143
Target:  5'- gCGGCCGCGAccuccagggacugccGGUCGaggacguaggcgcGGCGCA-GGGc -3'
miRNA:   3'- aGUCGGCGCU---------------CCAGC-------------CCGCGUaCCCa -5'
23077 3' -62.2 NC_005178.1 + 10319 0.7 0.137382
Target:  5'- aUAGCCGa-GGGcCGGGCGCGgagGGGc -3'
miRNA:   3'- aGUCGGCgcUCCaGCCCGCGUa--CCCa -5'
23077 3' -62.2 NC_005178.1 + 18877 0.71 0.123087
Target:  5'- -aGGaCCGgGAGGUaCGGGCGCGccGGGa -3'
miRNA:   3'- agUC-GGCgCUCCA-GCCCGCGUa-CCCa -5'
23077 3' -62.2 NC_005178.1 + 3232 1.07 0.000163
Target:  5'- gUCAGCCGCGAGGUCGGGCGCAUGGGUg -3'
miRNA:   3'- -AGUCGGCGCUCCAGCCCGCGUACCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.