Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23077 | 5' | -54.5 | NC_005178.1 | + | 3269 | 1.12 | 0.000416 |
Target: 5'- uCAAGGCACUGCGCCCGUUCAUUCGCCg -3' miRNA: 3'- -GUUCCGUGACGCGGGCAAGUAAGCGG- -5' |
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23077 | 5' | -54.5 | NC_005178.1 | + | 11684 | 0.67 | 0.596237 |
Target: 5'- --cGGC-CUGCGCaCCGUcgaaucgcugaUCGcUCGCUg -3' miRNA: 3'- guuCCGuGACGCG-GGCA-----------AGUaAGCGG- -5' |
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23077 | 5' | -54.5 | NC_005178.1 | + | 23448 | 0.67 | 0.573613 |
Target: 5'- cCAGGGCgACggccaggGCGCCCGgcgCGaa-GCCg -3' miRNA: 3'- -GUUCCG-UGa------CGCGGGCaa-GUaagCGG- -5' |
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23077 | 5' | -54.5 | NC_005178.1 | + | 6884 | 0.67 | 0.573613 |
Target: 5'- uGGGGCgaGCgucCGCCCGUcuUCGUccagcugcUCGCCg -3' miRNA: 3'- gUUCCG--UGac-GCGGGCA--AGUA--------AGCGG- -5' |
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23077 | 5' | -54.5 | NC_005178.1 | + | 13588 | 0.67 | 0.566863 |
Target: 5'- -uGGGCGCUGUucaguugggauugcaGCCCGagCAacaCGCCg -3' miRNA: 3'- guUCCGUGACG---------------CGGGCaaGUaa-GCGG- -5' |
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23077 | 5' | -54.5 | NC_005178.1 | + | 9585 | 0.67 | 0.562374 |
Target: 5'- ---cGCGCUGCGCUgGgcgg-UCGCCg -3' miRNA: 3'- guucCGUGACGCGGgCaaguaAGCGG- -5' |
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23077 | 5' | -54.5 | NC_005178.1 | + | 6389 | 0.68 | 0.507244 |
Target: 5'- aGGGGCGuCUGCGCUCGauug-UCGCg -3' miRNA: 3'- gUUCCGU-GACGCGGGCaaguaAGCGg -5' |
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23077 | 5' | -54.5 | NC_005178.1 | + | 34230 | 0.68 | 0.504005 |
Target: 5'- -cGGGCugUGCuuugaauggaccagGUCCGacaCGUUCGCCa -3' miRNA: 3'- guUCCGugACG--------------CGGGCaa-GUAAGCGG- -5' |
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23077 | 5' | -54.5 | NC_005178.1 | + | 24902 | 0.68 | 0.496483 |
Target: 5'- gCAAGGCggaugACUGgGUCCGUUCGcucCGUCc -3' miRNA: 3'- -GUUCCG-----UGACgCGGGCAAGUaa-GCGG- -5' |
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23077 | 5' | -54.5 | NC_005178.1 | + | 8141 | 0.68 | 0.495413 |
Target: 5'- gAGGGCGCcaucgagauCGCCCGUggggacgaccaggUCGUUCGCg -3' miRNA: 3'- gUUCCGUGac-------GCGGGCA-------------AGUAAGCGg -5' |
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23077 | 5' | -54.5 | NC_005178.1 | + | 34487 | 0.69 | 0.45454 |
Target: 5'- aCGGGGCGCaGCGCCaaaUCAU-CGUCa -3' miRNA: 3'- -GUUCCGUGaCGCGGgcaAGUAaGCGG- -5' |
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23077 | 5' | -54.5 | NC_005178.1 | + | 4002 | 0.7 | 0.424376 |
Target: 5'- -cAGGUGCUGCGCaCCGUc----CGCCg -3' miRNA: 3'- guUCCGUGACGCG-GGCAaguaaGCGG- -5' |
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23077 | 5' | -54.5 | NC_005178.1 | + | 29156 | 0.71 | 0.376872 |
Target: 5'- -cAGGCGCUGCuguggaaucaGCCCaugccguacugGUUC-UUCGCCa -3' miRNA: 3'- guUCCGUGACG----------CGGG-----------CAAGuAAGCGG- -5' |
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23077 | 5' | -54.5 | NC_005178.1 | + | 19468 | 0.68 | 0.485827 |
Target: 5'- -cAGGCGCUGCGgCag---GUUCGCCa -3' miRNA: 3'- guUCCGUGACGCgGgcaagUAAGCGG- -5' |
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23077 | 5' | -54.5 | NC_005178.1 | + | 16547 | 0.69 | 0.45454 |
Target: 5'- --cGGUGCUGcCGCCCacggcgaacccgGUagCGUUCGCCa -3' miRNA: 3'- guuCCGUGAC-GCGGG------------CAa-GUAAGCGG- -5' |
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23077 | 5' | -54.5 | NC_005178.1 | + | 20150 | 0.69 | 0.434299 |
Target: 5'- --cGGCAUaGCGCCCGgcCAUguagGCCg -3' miRNA: 3'- guuCCGUGaCGCGGGCaaGUAag--CGG- -5' |
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23077 | 5' | -54.5 | NC_005178.1 | + | 6302 | 0.7 | 0.420446 |
Target: 5'- uCGAGGCGCUcagGCGCUCGacgaugcugUCGCCc -3' miRNA: 3'- -GUUCCGUGA---CGCGGGCaagua----AGCGG- -5' |
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23077 | 5' | -54.5 | NC_005178.1 | + | 25696 | 0.71 | 0.350142 |
Target: 5'- --cGGCGCUGUagggcugcuGCCCGUUUucgUGCCg -3' miRNA: 3'- guuCCGUGACG---------CGGGCAAGuaaGCGG- -5' |
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23077 | 5' | -54.5 | NC_005178.1 | + | 27993 | 0.72 | 0.300824 |
Target: 5'- gCAGGGCAUcGCGCUCGcgC-UUCGCUc -3' miRNA: 3'- -GUUCCGUGaCGCGGGCaaGuAAGCGG- -5' |
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23077 | 5' | -54.5 | NC_005178.1 | + | 34432 | 0.66 | 0.642934 |
Target: 5'- -cGGGCGCUGCGCuucuCCGgcccuugguagaucgUCAUgaaggcaggCGCCc -3' miRNA: 3'- guUCCGUGACGCG----GGCa--------------AGUAa--------GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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