miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23078 3' -58.5 NC_005178.1 + 18134 0.67 0.401181
Target:  5'- aCCGAGGcCgAGCAgCUCGGcUGCGCGcCg -3'
miRNA:   3'- -GGCUCCaGgUCGU-GGGCU-ACGUGCcG- -5'
23078 3' -58.5 NC_005178.1 + 7988 0.67 0.399355
Target:  5'- cCCGAGGccgUCCaggGGCugCCGggGCugacccugacacCGGCa -3'
miRNA:   3'- -GGCUCC---AGG---UCGugGGCuaCGu-----------GCCG- -5'
23078 3' -58.5 NC_005178.1 + 7768 0.67 0.392103
Target:  5'- gCGGaGUCCAGU-CCUGGUGCGaGGCc -3'
miRNA:   3'- gGCUcCAGGUCGuGGGCUACGUgCCG- -5'
23078 3' -58.5 NC_005178.1 + 6387 0.67 0.383159
Target:  5'- -aGAGGggcgUCuGCGCUCGAuUGuCGCGGCg -3'
miRNA:   3'- ggCUCCa---GGuCGUGGGCU-AC-GUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 5317 0.67 0.383159
Target:  5'- gCCGAccUCCAGCGCCUGAaccuggagcUGUacaccgguGCGGCc -3'
miRNA:   3'- -GGCUccAGGUCGUGGGCU---------ACG--------UGCCG- -5'
23078 3' -58.5 NC_005178.1 + 25646 0.67 0.382273
Target:  5'- aCCGcAGGcguugcaUCaCAGCACCUcccGCACGGCc -3'
miRNA:   3'- -GGC-UCC-------AG-GUCGUGGGcuaCGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 26725 0.68 0.37348
Target:  5'- aCCGggcAGGcuUCCAGCagagcguuacgacGCUCGcgGCugGGCu -3'
miRNA:   3'- -GGC---UCC--AGGUCG-------------UGGGCuaCGugCCG- -5'
23078 3' -58.5 NC_005178.1 + 8137 0.68 0.365685
Target:  5'- aCCGAG--CCAGCGCCCGGcgggauCGCGGa -3'
miRNA:   3'- -GGCUCcaGGUCGUGGGCUac----GUGCCg -5'
23078 3' -58.5 NC_005178.1 + 17870 0.68 0.365685
Target:  5'- gCGAGGUCCAggacgugcuccuGgACCCGGUacgccagcGCGCcuGGCa -3'
miRNA:   3'- gGCUCCAGGU------------CgUGGGCUA--------CGUG--CCG- -5'
23078 3' -58.5 NC_005178.1 + 5713 0.68 0.363111
Target:  5'- uCCucGGUCCAGCGacCCCGGaGCAgaucgccgcaucggUGGCg -3'
miRNA:   3'- -GGcuCCAGGUCGU--GGGCUaCGU--------------GCCG- -5'
23078 3' -58.5 NC_005178.1 + 27295 0.68 0.357155
Target:  5'- gCGuGG-CCGGCAggCCGAUGCGucCGGCc -3'
miRNA:   3'- gGCuCCaGGUCGUg-GGCUACGU--GCCG- -5'
23078 3' -58.5 NC_005178.1 + 12015 0.68 0.332415
Target:  5'- gCCGAGGUCUuccgaaugaccuGGCGCCUcg-GCuuGGCc -3'
miRNA:   3'- -GGCUCCAGG------------UCGUGGGcuaCGugCCG- -5'
23078 3' -58.5 NC_005178.1 + 20837 0.69 0.324453
Target:  5'- gCGAGGaCCAGgGCgCCGGcucaGUugGGCg -3'
miRNA:   3'- gGCUCCaGGUCgUG-GGCUa---CGugCCG- -5'
23078 3' -58.5 NC_005178.1 + 8573 0.69 0.323665
Target:  5'- gCCGcccAGG-CCAGgggcgcgcaggguCACCUGgcGCACGGCg -3'
miRNA:   3'- -GGC---UCCaGGUC-------------GUGGGCuaCGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 16336 0.69 0.308957
Target:  5'- gCCGGGGagCGGguUUCGGUGCcguccgugGCGGCg -3'
miRNA:   3'- -GGCUCCagGUCguGGGCUACG--------UGCCG- -5'
23078 3' -58.5 NC_005178.1 + 24299 0.69 0.308957
Target:  5'- gCGAGGUCCaacugcugGGuCugCCGAcGC-CGGCc -3'
miRNA:   3'- gGCUCCAGG--------UC-GugGGCUaCGuGCCG- -5'
23078 3' -58.5 NC_005178.1 + 9059 0.69 0.299191
Target:  5'- uUGAuGUCCAGCAgcagcggaguaagcCCUGGcUGCAUGGCg -3'
miRNA:   3'- gGCUcCAGGUCGU--------------GGGCU-ACGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 20775 0.7 0.279675
Target:  5'- aCCu-GGUCCAGCGcuuCCUGAU-CGCGGUa -3'
miRNA:   3'- -GGcuCCAGGUCGU---GGGCUAcGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 37484 0.7 0.272019
Target:  5'- aCCGAGGaCCAGCGCgaaugcaUCGAgcaGCuCGGCc -3'
miRNA:   3'- -GGCUCCaGGUCGUG-------GGCUa--CGuGCCG- -5'
23078 3' -58.5 NC_005178.1 + 333 0.7 0.265881
Target:  5'- gCUGucAGGUCCGGCGCugugCCGGUaGCgAUGGCg -3'
miRNA:   3'- -GGC--UCCAGGUCGUG----GGCUA-CG-UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.