miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23079 3' -54.3 NC_005178.1 + 23841 0.67 0.59861
Target:  5'- gGAUUGCUGGugccUACGGCGGCaucaaGGCgGCc -3'
miRNA:   3'- -CUAACGGCUc---AUGUUGCUGg----CCGgCG- -5'
23079 3' -54.3 NC_005178.1 + 17630 0.67 0.59861
Target:  5'- uGAcgGUCGAGUcCAGCgccggcaaGACCGGCCa- -3'
miRNA:   3'- -CUaaCGGCUCAuGUUG--------CUGGCCGGcg -5'
23079 3' -54.3 NC_005178.1 + 9397 0.67 0.5862
Target:  5'- ---aGCCGAG-GCGcCGACCGucagccccugggcGCCGCc -3'
miRNA:   3'- cuaaCGGCUCaUGUuGCUGGC-------------CGGCG- -5'
23079 3' -54.3 NC_005178.1 + 2408 0.67 0.580574
Target:  5'- ---aGCCGGcuggcguucgucaacGUgACGACguucgGACCGGCCGCc -3'
miRNA:   3'- cuaaCGGCU---------------CA-UGUUG-----CUGGCCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 4893 0.68 0.564887
Target:  5'- ---cGCCGuAGUGCAugucguagACGACCaGGUCGa -3'
miRNA:   3'- cuaaCGGC-UCAUGU--------UGCUGG-CCGGCg -5'
23079 3' -54.3 NC_005178.1 + 17045 0.68 0.558197
Target:  5'- ---cGCCGGGUcgggguuaccggggGCGGCGACCuucagcugggcgguGGCgGCg -3'
miRNA:   3'- cuaaCGGCUCA--------------UGUUGCUGG--------------CCGgCG- -5'
23079 3' -54.3 NC_005178.1 + 31470 0.68 0.558197
Target:  5'- ---gGCCGGcucgcugaacauuccGUGCGacACGGCCGGCCu- -3'
miRNA:   3'- cuaaCGGCU---------------CAUGU--UGCUGGCCGGcg -5'
23079 3' -54.3 NC_005178.1 + 28326 0.68 0.553749
Target:  5'- --aUGCUucgGAGUcguGCAGCGGCgGGCCuuGCa -3'
miRNA:   3'- cuaACGG---CUCA---UGUUGCUGgCCGG--CG- -5'
23079 3' -54.3 NC_005178.1 + 30422 0.68 0.553749
Target:  5'- ---cGaCgGGGUuguuCAGCGgcGCCGGCCGCu -3'
miRNA:   3'- cuaaC-GgCUCAu---GUUGC--UGGCCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 22471 0.68 0.553749
Target:  5'- -cUUGCCGG--ACGACG-UCGGCgGCg -3'
miRNA:   3'- cuAACGGCUcaUGUUGCuGGCCGgCG- -5'
23079 3' -54.3 NC_005178.1 + 23478 0.68 0.542678
Target:  5'- ---aGCCGGcccGCugcuCGGCCGGCUGCu -3'
miRNA:   3'- cuaaCGGCUca-UGuu--GCUGGCCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 20929 0.68 0.531681
Target:  5'- ---cGCCGAGgucauCGGCGuGCCGGuaGCg -3'
miRNA:   3'- cuaaCGGCUCau---GUUGC-UGGCCggCG- -5'
23079 3' -54.3 NC_005178.1 + 2855 0.68 0.531681
Target:  5'- ---cGCCGGGUcgaacggauGCGgaACGGCUGGCCa- -3'
miRNA:   3'- cuaaCGGCUCA---------UGU--UGCUGGCCGGcg -5'
23079 3' -54.3 NC_005178.1 + 9027 0.68 0.531681
Target:  5'- cGUUGCCGgcuucgaccuGGaGCAAUG-CCGcGCCGCg -3'
miRNA:   3'- cUAACGGC----------UCaUGUUGCuGGC-CGGCG- -5'
23079 3' -54.3 NC_005178.1 + 10933 0.68 0.520766
Target:  5'- ---cGCCGAGU-CGAucCGGCgCGGcCCGCc -3'
miRNA:   3'- cuaaCGGCUCAuGUU--GCUG-GCC-GGCG- -5'
23079 3' -54.3 NC_005178.1 + 7581 0.69 0.509938
Target:  5'- aGUUGCCGGGcUGCGcguuccACG-CCaGGCCGUu -3'
miRNA:   3'- cUAACGGCUC-AUGU------UGCuGG-CCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 8837 0.69 0.508861
Target:  5'- cGcgUGCCGGGUGugagcccCGACGccACCGaCCGCg -3'
miRNA:   3'- -CuaACGGCUCAU-------GUUGC--UGGCcGGCG- -5'
23079 3' -54.3 NC_005178.1 + 17577 0.69 0.506709
Target:  5'- --cUGCCG-GUGCcgaaucguuccguuGACGG-CGGCCGCu -3'
miRNA:   3'- cuaACGGCuCAUG--------------UUGCUgGCCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 37195 0.69 0.499207
Target:  5'- ---gGCCGAGUuuGACGccaucgcuACCGGCacaGCg -3'
miRNA:   3'- cuaaCGGCUCAugUUGC--------UGGCCGg--CG- -5'
23079 3' -54.3 NC_005178.1 + 15722 0.69 0.499207
Target:  5'- ---cGCCGc--GCAACGcCuCGGCCGCa -3'
miRNA:   3'- cuaaCGGCucaUGUUGCuG-GCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.