miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23079 5' -55.2 NC_005178.1 + 17801 0.66 0.591867
Target:  5'- aUGCCGC-CAUgGUggcGACggUCGAGCGCg -3'
miRNA:   3'- aACGGCGcGUAgCAa--CUG--GGCUUGUG- -5'
23079 5' -55.2 NC_005178.1 + 352 0.66 0.591867
Target:  5'- cUGCCGCGUcuuggacCGUUGACuuGGugugauccacaaGCACu -3'
miRNA:   3'- aACGGCGCGua-----GCAACUGggCU------------UGUG- -5'
23079 5' -55.2 NC_005178.1 + 18152 0.66 0.588448
Target:  5'- -gGCUGCGCGcCGUUGGCUgaugccggcuuucuUGAGCAg -3'
miRNA:   3'- aaCGGCGCGUaGCAACUGG--------------GCUUGUg -5'
23079 5' -55.2 NC_005178.1 + 33791 0.66 0.580484
Target:  5'- gUGCCGCcCuuggCGaUGGCCCG-GCGCg -3'
miRNA:   3'- aACGGCGcGua--GCaACUGGGCuUGUG- -5'
23079 5' -55.2 NC_005178.1 + 11437 0.67 0.524444
Target:  5'- -aGCCGUcuugGCGUUGUUGGCC--GACGCu -3'
miRNA:   3'- aaCGGCG----CGUAGCAACUGGgcUUGUG- -5'
23079 5' -55.2 NC_005178.1 + 11743 0.67 0.491812
Target:  5'- --cCCGCGCAUaugccaCGgccgUGGCCCGAGC-Ca -3'
miRNA:   3'- aacGGCGCGUA------GCa---ACUGGGCUUGuG- -5'
23079 5' -55.2 NC_005178.1 + 22635 0.67 0.481142
Target:  5'- -cGCCGCGCAga----ACgCCGAGCACa -3'
miRNA:   3'- aaCGGCGCGUagcaacUG-GGCUUGUG- -5'
23079 5' -55.2 NC_005178.1 + 23250 0.68 0.429601
Target:  5'- -gGCCGCGCAUCcgcuugccgGAgCCGAAgACc -3'
miRNA:   3'- aaCGGCGCGUAGcaa------CUgGGCUUgUG- -5'
23079 5' -55.2 NC_005178.1 + 34193 0.69 0.419686
Target:  5'- -gGCCGUGCAUCGg-GugCUGGACc- -3'
miRNA:   3'- aaCGGCGCGUAGCaaCugGGCUUGug -5'
23079 5' -55.2 NC_005178.1 + 9934 0.69 0.419686
Target:  5'- -gGCCaGCGCAUCcuGUUGuuGCUgGAGCGCg -3'
miRNA:   3'- aaCGG-CGCGUAG--CAAC--UGGgCUUGUG- -5'
23079 5' -55.2 NC_005178.1 + 34001 0.69 0.372265
Target:  5'- -cGUCGCGCAUCaugugGUUGacguaGCCCGAGC-Cg -3'
miRNA:   3'- aaCGGCGCGUAG-----CAAC-----UGGGCUUGuG- -5'
23079 5' -55.2 NC_005178.1 + 34694 0.7 0.363228
Target:  5'- -aGCCGUuccGCAUcCGUUcGACCCG-GCGCg -3'
miRNA:   3'- aaCGGCG---CGUA-GCAA-CUGGGCuUGUG- -5'
23079 5' -55.2 NC_005178.1 + 1216 0.7 0.331133
Target:  5'- -cGCCGCGCuggaccugagcccUGUgaagcucUGGCCCGAACGCu -3'
miRNA:   3'- aaCGGCGCGua-----------GCA-------ACUGGGCUUGUG- -5'
23079 5' -55.2 NC_005178.1 + 20427 0.72 0.274075
Target:  5'- -aGCUGCGCGaaacccUCGgccUGGCCCaGGACGCg -3'
miRNA:   3'- aaCGGCGCGU------AGCa--ACUGGG-CUUGUG- -5'
23079 5' -55.2 NC_005178.1 + 3867 1.06 0.000857
Target:  5'- cUUGCCGCGCAUCGUUGACCCGAACACc -3'
miRNA:   3'- -AACGGCGCGUAGCAACUGGGCUUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.