miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23081 3' -55.7 NC_005178.1 + 4292 1.08 0.000574
Target:  5'- uGACGGCGGGUAUGCCCUGGAAAUGGAu -3'
miRNA:   3'- -CUGCCGCCCAUACGGGACCUUUACCU- -5'
23081 3' -55.7 NC_005178.1 + 30088 0.73 0.2152
Target:  5'- --aGGCcaGGGUgAUGCCCUGGAAGcGGGu -3'
miRNA:   3'- cugCCG--CCCA-UACGGGACCUUUaCCU- -5'
23081 3' -55.7 NC_005178.1 + 28149 0.7 0.353006
Target:  5'- gGACGGUGcGGUucuugGCCgUGGuguAGUGGAu -3'
miRNA:   3'- -CUGCCGC-CCAua---CGGgACCu--UUACCU- -5'
23081 3' -55.7 NC_005178.1 + 16376 0.66 0.542678
Target:  5'- gGGCGGCGGcGccUAcGCCCUGGGGcaGGu -3'
miRNA:   3'- -CUGCCGCC-C--AUaCGGGACCUUuaCCu -5'
23081 3' -55.7 NC_005178.1 + 36532 0.66 0.576082
Target:  5'- gGACGGCcgagcGGUAgccuUGCCCgcuacGggGUGGAg -3'
miRNA:   3'- -CUGCCGc----CCAU----ACGGGac---CuuUACCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.