Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23081 | 5' | -60 | NC_005178.1 | + | 4326 | 1.09 | 0.000191 |
Target: 5'- cUGUCCAUCCCCGGCCUCGGCACGAUCa -3' miRNA: 3'- -ACAGGUAGGGGCCGGAGCCGUGCUAG- -5' |
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23081 | 5' | -60 | NC_005178.1 | + | 9422 | 0.75 | 0.079796 |
Target: 5'- cGUCCAcugagcgaaaccgCCCCGGCCUagcCGGgACGGUCu -3' miRNA: 3'- aCAGGUa------------GGGGCCGGA---GCCgUGCUAG- -5' |
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23081 | 5' | -60 | NC_005178.1 | + | 10060 | 0.68 | 0.275544 |
Target: 5'- uUGaCCAuguugUUCCUGGCCUCGGCGaucuucUGGUCc -3' miRNA: 3'- -ACaGGU-----AGGGGCCGGAGCCGU------GCUAG- -5' |
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23081 | 5' | -60 | NC_005178.1 | + | 10838 | 0.66 | 0.387065 |
Target: 5'- cGUCCcaggcgCCCuUGGCCacccCGGCaACGGUCu -3' miRNA: 3'- aCAGGua----GGG-GCCGGa---GCCG-UGCUAG- -5' |
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23081 | 5' | -60 | NC_005178.1 | + | 14869 | 0.66 | 0.344034 |
Target: 5'- -aUCCAg-CUCGGCCUgGGCGaGGUCg -3' miRNA: 3'- acAGGUagGGGCCGGAgCCGUgCUAG- -5' |
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23081 | 5' | -60 | NC_005178.1 | + | 14999 | 0.67 | 0.297088 |
Target: 5'- gUGgCCAUCCgUGGCCa-GGgGCGGUCc -3' miRNA: 3'- -ACaGGUAGGgGCCGGagCCgUGCUAG- -5' |
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23081 | 5' | -60 | NC_005178.1 | + | 17170 | 0.68 | 0.261888 |
Target: 5'- cGUCCAgggCCGGCUUCaGgGCGGUCa -3' miRNA: 3'- aCAGGUaggGGCCGGAGcCgUGCUAG- -5' |
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23081 | 5' | -60 | NC_005178.1 | + | 20155 | 0.69 | 0.248787 |
Target: 5'- cGUCUucagcuacgCCCCGGa--CGGCACGGUCc -3' miRNA: 3'- aCAGGua-------GGGGCCggaGCCGUGCUAG- -5' |
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23081 | 5' | -60 | NC_005178.1 | + | 20638 | 0.68 | 0.289764 |
Target: 5'- cGUCCAUauccgggaaugCCUCGGCCagGGCGcCGAg- -3' miRNA: 3'- aCAGGUA-----------GGGGCCGGagCCGU-GCUag -5' |
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23081 | 5' | -60 | NC_005178.1 | + | 21227 | 0.68 | 0.275544 |
Target: 5'- --cCCGcUCCCCGGCCggccgcaucaUCGGCGuCGAa- -3' miRNA: 3'- acaGGU-AGGGGCCGG----------AGCCGU-GCUag -5' |
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23081 | 5' | -60 | NC_005178.1 | + | 27719 | 0.69 | 0.230157 |
Target: 5'- cGUCCAUgCCCagcugGGCCUUGGCGaugugGAUUu -3' miRNA: 3'- aCAGGUAgGGG-----CCGGAGCCGUg----CUAG- -5' |
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23081 | 5' | -60 | NC_005178.1 | + | 29289 | 0.7 | 0.196427 |
Target: 5'- aGUgCGUCCCCGcCCUCGGUuuGGUUu -3' miRNA: 3'- aCAgGUAGGGGCcGGAGCCGugCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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