miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23082 3' -59.5 NC_005178.1 + 31423 0.66 0.393914
Target:  5'- -gCGCUGCCGaucugGCCUgauauccaGCUGC-UCCAGg -3'
miRNA:   3'- uaGCGGCGGCg----CGGA--------UGAUGcAGGUC- -5'
23082 3' -59.5 NC_005178.1 + 23896 0.66 0.384851
Target:  5'- gAUUGaCGCCGCGCCUAUcgucaacgGCGUUCu- -3'
miRNA:   3'- -UAGCgGCGGCGCGGAUGa-------UGCAGGuc -5'
23082 3' -59.5 NC_005178.1 + 17854 0.66 0.384851
Target:  5'- -gCGCCuGCCGC-CCUcgGCgAgGUCCAGg -3'
miRNA:   3'- uaGCGG-CGGCGcGGA--UGaUgCAGGUC- -5'
23082 3' -59.5 NC_005178.1 + 24282 0.66 0.375927
Target:  5'- --aGCCGaUgGCGCCUACggcgAgGUCCAa -3'
miRNA:   3'- uagCGGC-GgCGCGGAUGa---UgCAGGUc -5'
23082 3' -59.5 NC_005178.1 + 469 0.66 0.358502
Target:  5'- gGUCGCCGaCCGggaCGCCagcgagUGCUGCcgccucGUCCAGc -3'
miRNA:   3'- -UAGCGGC-GGC---GCGG------AUGAUG------CAGGUC- -5'
23082 3' -59.5 NC_005178.1 + 33898 0.66 0.358502
Target:  5'- cGUC-CUGCCGCGCCUggcggcgauGCUcgGCGgCCGGu -3'
miRNA:   3'- -UAGcGGCGGCGCGGA---------UGA--UGCaGGUC- -5'
23082 3' -59.5 NC_005178.1 + 1211 0.66 0.358502
Target:  5'- cUCGCCGCCGCGCUggacCUGaGcCCu- -3'
miRNA:   3'- uAGCGGCGGCGCGGau--GAUgCaGGuc -5'
23082 3' -59.5 NC_005178.1 + 16423 0.66 0.350004
Target:  5'- -aCGCUGCCGUcguucGCCcACUugaagGCGUUCAGg -3'
miRNA:   3'- uaGCGGCGGCG-----CGGaUGA-----UGCAGGUC- -5'
23082 3' -59.5 NC_005178.1 + 19489 0.66 0.350004
Target:  5'- -cCGUC-CCGCGCCguaUAcCGUCCAGu -3'
miRNA:   3'- uaGCGGcGGCGCGGaugAU-GCAGGUC- -5'
23082 3' -59.5 NC_005178.1 + 10254 0.66 0.350004
Target:  5'- -gCGCUGCUGCGCCUggagcuucuGCUcgGCGUUCc- -3'
miRNA:   3'- uaGCGGCGGCGCGGA---------UGA--UGCAGGuc -5'
23082 3' -59.5 NC_005178.1 + 28555 0.67 0.341651
Target:  5'- -cCGuCCGCCGCGCC-ACcggggGCGUcgCCGGc -3'
miRNA:   3'- uaGC-GGCGGCGCGGaUGa----UGCA--GGUC- -5'
23082 3' -59.5 NC_005178.1 + 22713 0.67 0.333442
Target:  5'- gGUCGCUGCCgagugccauaGCGCCaucgACGUCCuGg -3'
miRNA:   3'- -UAGCGGCGG----------CGCGGaugaUGCAGGuC- -5'
23082 3' -59.5 NC_005178.1 + 35103 0.67 0.325379
Target:  5'- cUCGCCGCCGagcuGCC-GCUgGCGgCCGGu -3'
miRNA:   3'- uAGCGGCGGCg---CGGaUGA-UGCaGGUC- -5'
23082 3' -59.5 NC_005178.1 + 22150 0.67 0.325379
Target:  5'- aGUCGCCGCCcauGCgGCCacCUACGUCa-- -3'
miRNA:   3'- -UAGCGGCGG---CG-CGGauGAUGCAGguc -5'
23082 3' -59.5 NC_005178.1 + 1536 0.67 0.325379
Target:  5'- gGUCGCCGCCcgcaugucGCGCCU-----GUCCGGc -3'
miRNA:   3'- -UAGCGGCGG--------CGCGGAugaugCAGGUC- -5'
23082 3' -59.5 NC_005178.1 + 6443 0.68 0.273012
Target:  5'- --gGCCGUCgGUGCCgaUGCUGacCGUCCAGg -3'
miRNA:   3'- uagCGGCGG-CGCGG--AUGAU--GCAGGUC- -5'
23082 3' -59.5 NC_005178.1 + 25317 0.7 0.204668
Target:  5'- gGUCGCUGUCG-GCCcGCUugG-CCAGg -3'
miRNA:   3'- -UAGCGGCGGCgCGGaUGAugCaGGUC- -5'
23082 3' -59.5 NC_005178.1 + 12766 0.7 0.18879
Target:  5'- -aCGCCcugcGCCGCGCCUACguccuCGaCCGGc -3'
miRNA:   3'- uaGCGG----CGGCGCGGAUGau---GCaGGUC- -5'
23082 3' -59.5 NC_005178.1 + 31589 0.71 0.183743
Target:  5'- -cCGCCGCCG-GCCUGgacCUGguccgcccCGUCCAGg -3'
miRNA:   3'- uaGCGGCGGCgCGGAU---GAU--------GCAGGUC- -5'
23082 3' -59.5 NC_005178.1 + 12136 0.73 0.131937
Target:  5'- -gCGCCGacgcacagacCCGCGCCUACcgcgACGUCCuGg -3'
miRNA:   3'- uaGCGGC----------GGCGCGGAUGa---UGCAGGuC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.