miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23084 3' -59.4 NC_005178.1 + 10325 0.66 0.37479
Target:  5'- ---gAGGGCCGG-GCGcGgaGGGGCg -3'
miRNA:   3'- caagUCCCGGCCgCGCuCgaCCUUGa -5'
23084 3' -59.4 NC_005178.1 + 14469 0.66 0.357329
Target:  5'- -gUCAGGGCCaGGC-UGAGCUucccGGAGg- -3'
miRNA:   3'- caAGUCCCGG-CCGcGCUCGA----CCUUga -5'
23084 3' -59.4 NC_005178.1 + 9931 0.66 0.355615
Target:  5'- ---gAGGGCCaGCGCauccuguuguuGCUGGAGCg -3'
miRNA:   3'- caagUCCCGGcCGCGcu---------CGACCUUGa -5'
23084 3' -59.4 NC_005178.1 + 6089 0.66 0.348816
Target:  5'- uGUUCAGcGaGCCGGCcgccaGCGGuucCUGGAGCa -3'
miRNA:   3'- -CAAGUC-C-CGGCCG-----CGCUc--GACCUUGa -5'
23084 3' -59.4 NC_005178.1 + 5812 0.67 0.332227
Target:  5'- -cUC-GGGCCaGGCGCuGGGCUccauuaucaGGAACg -3'
miRNA:   3'- caAGuCCCGG-CCGCG-CUCGA---------CCUUGa -5'
23084 3' -59.4 NC_005178.1 + 36185 0.67 0.307673
Target:  5'- aGUUCGGGGCCaguggcuGGaCG-GAGCUGGuaGGCg -3'
miRNA:   3'- -CAAGUCCCGG-------CC-GCgCUCGACC--UUGa -5'
23084 3' -59.4 NC_005178.1 + 12902 0.67 0.30081
Target:  5'- -aUCGGcgcaguugcuGGCCGGUgGUGGGCUGGAGg- -3'
miRNA:   3'- caAGUC----------CCGGCCG-CGCUCGACCUUga -5'
23084 3' -59.4 NC_005178.1 + 18986 0.69 0.238624
Target:  5'- -gUCAcGGUCGGCGCGGGUUGugaucGAGCg -3'
miRNA:   3'- caAGUcCCGGCCGCGCUCGAC-----CUUGa -5'
23084 3' -59.4 NC_005178.1 + 12655 0.69 0.226353
Target:  5'- -cUCGGcGGCCGGCGCGcuGGCgGGuGGCc -3'
miRNA:   3'- caAGUC-CCGGCCGCGC--UCGaCC-UUGa -5'
23084 3' -59.4 NC_005178.1 + 33923 0.7 0.198004
Target:  5'- -cUCGGcGGCCGGUGCcGGCUuuccGGGGCg -3'
miRNA:   3'- caAGUC-CCGGCCGCGcUCGA----CCUUGa -5'
23084 3' -59.4 NC_005178.1 + 32441 0.71 0.18252
Target:  5'- aGUUCA--GCCguGGCGCGAuccGCUGGAGCUa -3'
miRNA:   3'- -CAAGUccCGG--CCGCGCU---CGACCUUGA- -5'
23084 3' -59.4 NC_005178.1 + 20199 0.71 0.159088
Target:  5'- cGUUUccaGCCGGCGCGGGCUGccGAGCUg -3'
miRNA:   3'- -CAAGuccCGGCCGCGCUCGAC--CUUGA- -5'
23084 3' -59.4 NC_005178.1 + 13237 0.72 0.15474
Target:  5'- -gUCGGGGCCGGCGuCGgcagacccagcAGUUGGAcCUc -3'
miRNA:   3'- caAGUCCCGGCCGC-GC-----------UCGACCUuGA- -5'
23084 3' -59.4 NC_005178.1 + 10240 0.72 0.15474
Target:  5'- -cUCAGuaGGCCGGCGCGcugcuGCgccUGGAGCUu -3'
miRNA:   3'- caAGUC--CCGGCCGCGCu----CG---ACCUUGA- -5'
23084 3' -59.4 NC_005178.1 + 26896 0.73 0.113585
Target:  5'- --aCAGGGUCGGCGCGgagacgccGGCcGGGGCg -3'
miRNA:   3'- caaGUCCCGGCCGCGC--------UCGaCCUUGa -5'
23084 3' -59.4 NC_005178.1 + 5289 1.08 0.000254
Target:  5'- cGUUCAGGGCCGGCGCGAGCUGGAACUg -3'
miRNA:   3'- -CAAGUCCCGGCCGCGCUCGACCUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.