miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23085 3' -60.2 NC_005178.1 + 32918 0.66 0.360367
Target:  5'- gCGGCguggUCGCCg--GCAugccgauggcUGGUuuacCGGGGGCu -3'
miRNA:   3'- -GCCG----AGUGGagaCGU----------ACCA----GCCCCCG- -5'
23085 3' -60.2 NC_005178.1 + 22196 0.66 0.3355
Target:  5'- uGGCUcCACCg--GCAcUGGcgcauaaGGGGGCa -3'
miRNA:   3'- gCCGA-GUGGagaCGU-ACCag-----CCCCCG- -5'
23085 3' -60.2 NC_005178.1 + 32113 0.67 0.326701
Target:  5'- cCGGaUUACUucccacaUCUGC-UGG-CGGGGGCu -3'
miRNA:   3'- -GCCgAGUGG-------AGACGuACCaGCCCCCG- -5'
23085 3' -60.2 NC_005178.1 + 25364 0.68 0.275434
Target:  5'- aGGCUgGCCgggagCUGUccGGUUuGGGGGa -3'
miRNA:   3'- gCCGAgUGGa----GACGuaCCAG-CCCCCg -5'
23085 3' -60.2 NC_005178.1 + 17033 0.69 0.224282
Target:  5'- gGGCgccCACUUC-GCcgGGUCgggguuaccGGGGGCg -3'
miRNA:   3'- gCCGa--GUGGAGaCGuaCCAG---------CCCCCG- -5'
23085 3' -60.2 NC_005178.1 + 30142 0.69 0.218488
Target:  5'- uCGGCUC-CCUCaacaaGCGUGGcgUCGGcuauacGGGCg -3'
miRNA:   3'- -GCCGAGuGGAGa----CGUACC--AGCC------CCCG- -5'
23085 3' -60.2 NC_005178.1 + 16160 0.7 0.196579
Target:  5'- uGGCgauCUUCUGCcagGUGGU-GGGGGCc -3'
miRNA:   3'- gCCGaguGGAGACG---UACCAgCCCCCG- -5'
23085 3' -60.2 NC_005178.1 + 10314 0.72 0.134405
Target:  5'- gCGGUucuUCGCCUCggugacGCuggacUGGUCGaGGGGCg -3'
miRNA:   3'- -GCCG---AGUGGAGa-----CGu----ACCAGC-CCCCG- -5'
23085 3' -60.2 NC_005178.1 + 13288 0.75 0.087755
Target:  5'- uCGGCUCGCagggcguaauaCUGCG-GGUCGaGGGGCg -3'
miRNA:   3'- -GCCGAGUGga---------GACGUaCCAGC-CCCCG- -5'
23085 3' -60.2 NC_005178.1 + 5400 1.12 0.000125
Target:  5'- cCGGCUCACCUCUGCAUGGUCGGGGGCa -3'
miRNA:   3'- -GCCGAGUGGAGACGUACCAGCCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.