Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23086 | 3' | -63.4 | NC_005178.1 | + | 23396 | 0.68 | 0.184733 |
Target: 5'- aUCGCCuccaaCAUC-GUGGCGGCCuguUCGaaGGCa -3' miRNA: 3'- -AGCGGc----GUAGcCACCGCCGG---AGC--CCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 25182 | 0.69 | 0.149516 |
Target: 5'- -gGCCGC--CGGUaGUGGCCU-GGGCg -3' miRNA: 3'- agCGGCGuaGCCAcCGCCGGAgCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 26178 | 0.75 | 0.053877 |
Target: 5'- aUCGgCGCggCGGUGGCcGCUgCGGGCg -3' miRNA: 3'- -AGCgGCGuaGCCACCGcCGGaGCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 26706 | 0.67 | 0.204959 |
Target: 5'- cCGuuGC--CGG-GGUGGCCaaGGGCg -3' miRNA: 3'- aGCggCGuaGCCaCCGCCGGagCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 29402 | 0.66 | 0.244346 |
Target: 5'- gUCGUCcccacggGCGaucUCGaUGGCGcCCUCGGGCa -3' miRNA: 3'- -AGCGG-------CGU---AGCcACCGCcGGAGCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 30158 | 0.67 | 0.199213 |
Target: 5'- gCGUgGCGUCGGcuauacgGGCGGCCaguauguUUGcGGCu -3' miRNA: 3'- aGCGgCGUAGCCa------CCGCCGG-------AGC-CCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 30790 | 0.72 | 0.091617 |
Target: 5'- cCGCCugGCAgCGGUcGCGGCCUCgaccuGGGCc -3' miRNA: 3'- aGCGG--CGUaGCCAcCGCCGGAG-----CCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 31692 | 0.66 | 0.257524 |
Target: 5'- -gGCCGagggcCGGUGuaGCGGCCUggcuugaGGGCg -3' miRNA: 3'- agCGGCgua--GCCAC--CGCCGGAg------CCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 32271 | 0.77 | 0.035212 |
Target: 5'- gCGCCgGCccugaaCGGUGGCGGCCUCGGcCa -3' miRNA: 3'- aGCGG-CGua----GCCACCGCCGGAGCCcG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 33124 | 0.67 | 0.199729 |
Target: 5'- -gGUgGCuUgGGUGGUGGCUgcggUCGGGUg -3' miRNA: 3'- agCGgCGuAgCCACCGCCGG----AGCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 34525 | 0.7 | 0.137962 |
Target: 5'- gUCGCUGCGUCGcaggGGCGGCgCUCGu-- -3' miRNA: 3'- -AGCGGCGUAGCca--CCGCCG-GAGCccg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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