miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23086 3' -63.4 NC_005178.1 + 23396 0.68 0.184733
Target:  5'- aUCGCCuccaaCAUC-GUGGCGGCCuguUCGaaGGCa -3'
miRNA:   3'- -AGCGGc----GUAGcCACCGCCGG---AGC--CCG- -5'
23086 3' -63.4 NC_005178.1 + 25182 0.69 0.149516
Target:  5'- -gGCCGC--CGGUaGUGGCCU-GGGCg -3'
miRNA:   3'- agCGGCGuaGCCAcCGCCGGAgCCCG- -5'
23086 3' -63.4 NC_005178.1 + 26178 0.75 0.053877
Target:  5'- aUCGgCGCggCGGUGGCcGCUgCGGGCg -3'
miRNA:   3'- -AGCgGCGuaGCCACCGcCGGaGCCCG- -5'
23086 3' -63.4 NC_005178.1 + 26706 0.67 0.204959
Target:  5'- cCGuuGC--CGG-GGUGGCCaaGGGCg -3'
miRNA:   3'- aGCggCGuaGCCaCCGCCGGagCCCG- -5'
23086 3' -63.4 NC_005178.1 + 29402 0.66 0.244346
Target:  5'- gUCGUCcccacggGCGaucUCGaUGGCGcCCUCGGGCa -3'
miRNA:   3'- -AGCGG-------CGU---AGCcACCGCcGGAGCCCG- -5'
23086 3' -63.4 NC_005178.1 + 30158 0.67 0.199213
Target:  5'- gCGUgGCGUCGGcuauacgGGCGGCCaguauguUUGcGGCu -3'
miRNA:   3'- aGCGgCGUAGCCa------CCGCCGG-------AGC-CCG- -5'
23086 3' -63.4 NC_005178.1 + 30790 0.72 0.091617
Target:  5'- cCGCCugGCAgCGGUcGCGGCCUCgaccuGGGCc -3'
miRNA:   3'- aGCGG--CGUaGCCAcCGCCGGAG-----CCCG- -5'
23086 3' -63.4 NC_005178.1 + 31692 0.66 0.257524
Target:  5'- -gGCCGagggcCGGUGuaGCGGCCUggcuugaGGGCg -3'
miRNA:   3'- agCGGCgua--GCCAC--CGCCGGAg------CCCG- -5'
23086 3' -63.4 NC_005178.1 + 32271 0.77 0.035212
Target:  5'- gCGCCgGCccugaaCGGUGGCGGCCUCGGcCa -3'
miRNA:   3'- aGCGG-CGua----GCCACCGCCGGAGCCcG- -5'
23086 3' -63.4 NC_005178.1 + 33124 0.67 0.199729
Target:  5'- -gGUgGCuUgGGUGGUGGCUgcggUCGGGUg -3'
miRNA:   3'- agCGgCGuAgCCACCGCCGG----AGCCCG- -5'
23086 3' -63.4 NC_005178.1 + 34525 0.7 0.137962
Target:  5'- gUCGCUGCGUCGcaggGGCGGCgCUCGu-- -3'
miRNA:   3'- -AGCGGCGUAGCca--CCGCCG-GAGCccg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.