Results 21 - 31 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23086 | 3' | -63.4 | NC_005178.1 | + | 14762 | 0.66 | 0.238872 |
Target: 5'- cUCGCCGUAcugcUCGaccaGGuCGGCCUgGGuGCa -3' miRNA: 3'- -AGCGGCGU----AGCca--CC-GCCGGAgCC-CG- -5' |
|||||||
23086 | 3' | -63.4 | NC_005178.1 | + | 12644 | 0.67 | 0.215774 |
Target: 5'- gUGCUGUA-CGGcucGGCGGCCggcgcgcuggCGGGUg -3' miRNA: 3'- aGCGGCGUaGCCa--CCGCCGGa---------GCCCG- -5' |
|||||||
23086 | 3' | -63.4 | NC_005178.1 | + | 11297 | 0.68 | 0.194616 |
Target: 5'- uUCGaguCCGCccaGGUGGUGGCC--GGGCu -3' miRNA: 3'- -AGC---GGCGuagCCACCGCCGGagCCCG- -5' |
|||||||
23086 | 3' | -63.4 | NC_005178.1 | + | 9878 | 0.67 | 0.199729 |
Target: 5'- cUCGCuCGCGUCGcG-GGCGuGCgCUCGGcCa -3' miRNA: 3'- -AGCG-GCGUAGC-CaCCGC-CG-GAGCCcG- -5' |
|||||||
23086 | 3' | -63.4 | NC_005178.1 | + | 7060 | 0.72 | 0.091617 |
Target: 5'- -aGCCGCAUUGaGUGccCGGCCcUGGGCg -3' miRNA: 3'- agCGGCGUAGC-CACc-GCCGGaGCCCG- -5' |
|||||||
23086 | 3' | -63.4 | NC_005178.1 | + | 6924 | 0.7 | 0.13214 |
Target: 5'- gUGCUGCcgaaAUCGGUGGCGGUUccgcgcuggagcagCGGGUa -3' miRNA: 3'- aGCGGCG----UAGCCACCGCCGGa-------------GCCCG- -5' |
|||||||
23086 | 3' | -63.4 | NC_005178.1 | + | 5739 | 1.11 | 0.00007 |
Target: 5'- aUCGCCGCAUCGGUGGCGGCCUCGGGCa -3' miRNA: 3'- -AGCGGCGUAGCCACCGCCGGAGCCCG- -5' |
|||||||
23086 | 3' | -63.4 | NC_005178.1 | + | 5307 | 0.71 | 0.105136 |
Target: 5'- gCGCUaCAUCGGUcggcucgaccaGGCGGCC-CaGGGCg -3' miRNA: 3'- aGCGGcGUAGCCA-----------CCGCCGGaG-CCCG- -5' |
|||||||
23086 | 3' | -63.4 | NC_005178.1 | + | 5260 | 0.69 | 0.161945 |
Target: 5'- cUCGaCCaCGUCGGUGGCGGCgCUacaGaGCg -3' miRNA: 3'- -AGC-GGcGUAGCCACCGCCG-GAg--CcCG- -5' |
|||||||
23086 | 3' | -63.4 | NC_005178.1 | + | 2119 | 0.73 | 0.081779 |
Target: 5'- gCGCCcggucagcgucagGCuGUCGGUGGCGGCCagcgcCGGGg -3' miRNA: 3'- aGCGG-------------CG-UAGCCACCGCCGGa----GCCCg -5' |
|||||||
23086 | 3' | -63.4 | NC_005178.1 | + | 1992 | 0.66 | 0.264001 |
Target: 5'- cCGCUGCAgcagaGGUcGCGGCCU--GGCu -3' miRNA: 3'- aGCGGCGUag---CCAcCGCCGGAgcCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home