Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23086 | 3' | -63.4 | NC_005178.1 | + | 5739 | 1.11 | 0.00007 |
Target: 5'- aUCGCCGCAUCGGUGGCGGCCUCGGGCa -3' miRNA: 3'- -AGCGGCGUAGCCACCGCCGGAGCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 32271 | 0.77 | 0.035212 |
Target: 5'- gCGCCgGCccugaaCGGUGGCGGCCUCGGcCa -3' miRNA: 3'- aGCGG-CGua----GCCACCGCCGGAGCCcG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 26178 | 0.75 | 0.053877 |
Target: 5'- aUCGgCGCggCGGUGGCcGCUgCGGGCg -3' miRNA: 3'- -AGCgGCGuaGCCACCGcCGGaGCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 2119 | 0.73 | 0.081779 |
Target: 5'- gCGCCcggucagcgucagGCuGUCGGUGGCGGCCagcgcCGGGg -3' miRNA: 3'- aGCGG-------------CG-UAGCCACCGCCGGa----GCCCg -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 7060 | 0.72 | 0.091617 |
Target: 5'- -aGCCGCAUUGaGUGccCGGCCcUGGGCg -3' miRNA: 3'- agCGGCGUAGC-CACc-GCCGGaGCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 30790 | 0.72 | 0.091617 |
Target: 5'- cCGCCugGCAgCGGUcGCGGCCUCgaccuGGGCc -3' miRNA: 3'- aGCGG--CGUaGCCAcCGCCGGAG-----CCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 5307 | 0.71 | 0.105136 |
Target: 5'- gCGCUaCAUCGGUcggcucgaccaGGCGGCC-CaGGGCg -3' miRNA: 3'- aGCGGcGUAGCCA-----------CCGCCGGaG-CCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 17043 | 0.71 | 0.111052 |
Target: 5'- uUCGCCGgGUCGGgguuaccgggGGCGGCgacCUucagcUGGGCg -3' miRNA: 3'- -AGCGGCgUAGCCa---------CCGCCG---GA-----GCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 23365 | 0.71 | 0.117279 |
Target: 5'- gCGUCGCAcCaG-GGCGGCagUCGGGCg -3' miRNA: 3'- aGCGGCGUaGcCaCCGCCGg-AGCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 6924 | 0.7 | 0.13214 |
Target: 5'- gUGCUGCcgaaAUCGGUGGCGGUUccgcgcuggagcagCGGGUa -3' miRNA: 3'- aGCGGCG----UAGCCACCGCCGGa-------------GCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 34525 | 0.7 | 0.137962 |
Target: 5'- gUCGCUGCGUCGcaggGGCGGCgCUCGu-- -3' miRNA: 3'- -AGCGGCGUAGCca--CCGCCG-GAGCccg -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 25182 | 0.69 | 0.149516 |
Target: 5'- -gGCCGC--CGGUaGUGGCCU-GGGCg -3' miRNA: 3'- agCGGCGuaGCCAcCGCCGGAgCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 5260 | 0.69 | 0.161945 |
Target: 5'- cUCGaCCaCGUCGGUGGCGGCgCUacaGaGCg -3' miRNA: 3'- -AGC-GGcGUAGCCACCGCCG-GAg--CcCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 16191 | 0.69 | 0.16629 |
Target: 5'- cUGCUGCGagCGGUGacCGGCCUCGGcCa -3' miRNA: 3'- aGCGGCGUa-GCCACc-GCCGGAGCCcG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 17160 | 0.68 | 0.175296 |
Target: 5'- gUCGCCuggGCGUCcagGGcCGGCUUCaGGGCg -3' miRNA: 3'- -AGCGG---CGUAGccaCC-GCCGGAG-CCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 23396 | 0.68 | 0.184733 |
Target: 5'- aUCGCCuccaaCAUC-GUGGCGGCCuguUCGaaGGCa -3' miRNA: 3'- -AGCGGc----GUAGcCACCGCCGG---AGC--CCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 18193 | 0.68 | 0.189618 |
Target: 5'- -gGCUGCG-CGGUGGCGuCUaUGGGCc -3' miRNA: 3'- agCGGCGUaGCCACCGCcGGaGCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 11297 | 0.68 | 0.194616 |
Target: 5'- uUCGaguCCGCccaGGUGGUGGCC--GGGCu -3' miRNA: 3'- -AGC---GGCGuagCCACCGCCGGagCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 30158 | 0.67 | 0.199213 |
Target: 5'- gCGUgGCGUCGGcuauacgGGCGGCCaguauguUUGcGGCu -3' miRNA: 3'- aGCGgCGUAGCCa------CCGCCGG-------AGC-CCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 9878 | 0.67 | 0.199729 |
Target: 5'- cUCGCuCGCGUCGcG-GGCGuGCgCUCGGcCa -3' miRNA: 3'- -AGCG-GCGUAGC-CaCCGC-CG-GAGCCcG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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