miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23086 5' -57 NC_005178.1 + 16806 0.65 0.488371
Target:  5'- aCGCCCGGCGCUcugcuguugggucaGggCGGCGauggGCUUg -3'
miRNA:   3'- aGCGGGUCGUGG--------------CaaGUCGCga--UGAA- -5'
23086 5' -57 NC_005178.1 + 22141 0.66 0.480974
Target:  5'- -aGUUCGGCGCCGaagcccGCGCUGCUg -3'
miRNA:   3'- agCGGGUCGUGGCaagu--CGCGAUGAa -5'
23086 5' -57 NC_005178.1 + 23668 0.66 0.480974
Target:  5'- -gGCCCGuucaCGCCGggCGGCGCUGg-- -3'
miRNA:   3'- agCGGGUc---GUGGCaaGUCGCGAUgaa -5'
23086 5' -57 NC_005178.1 + 19055 0.66 0.470502
Target:  5'- gCGCCCcuuCGCCGcUC-GCGCUGCa- -3'
miRNA:   3'- aGCGGGuc-GUGGCaAGuCGCGAUGaa -5'
23086 5' -57 NC_005178.1 + 11491 0.66 0.470502
Target:  5'- gUCGUCCAG-GCCGUcgCuGGCGUUACUc -3'
miRNA:   3'- -AGCGGGUCgUGGCAa-G-UCGCGAUGAa -5'
23086 5' -57 NC_005178.1 + 24397 0.66 0.470502
Target:  5'- gCGCCgCAGCcgACCGUUgccCuGCGCUAUa- -3'
miRNA:   3'- aGCGG-GUCG--UGGCAA---GuCGCGAUGaa -5'
23086 5' -57 NC_005178.1 + 7125 0.66 0.466347
Target:  5'- gCGgCCGGCGCCGcugaacaaccccgUCGcgauGCGCUGCUg -3'
miRNA:   3'- aGCgGGUCGUGGCa------------AGU----CGCGAUGAa -5'
23086 5' -57 NC_005178.1 + 20393 0.66 0.460148
Target:  5'- aCGCCuUGGcCACCG-UCAGCGCUcggGCa- -3'
miRNA:   3'- aGCGG-GUC-GUGGCaAGUCGCGA---UGaa -5'
23086 5' -57 NC_005178.1 + 23401 0.66 0.449916
Target:  5'- gUCaCCCAGCACUGggCAGCcgUGCUg -3'
miRNA:   3'- -AGcGGGUCGUGGCaaGUCGcgAUGAa -5'
23086 5' -57 NC_005178.1 + 11886 0.66 0.449916
Target:  5'- aUCGCCCAG-GCCGUgcgggaGGUGCUGu-- -3'
miRNA:   3'- -AGCGGGUCgUGGCAag----UCGCGAUgaa -5'
23086 5' -57 NC_005178.1 + 7302 0.66 0.439811
Target:  5'- cCGCCCGGCugCuc-CAGCGCa---- -3'
miRNA:   3'- aGCGGGUCGugGcaaGUCGCGaugaa -5'
23086 5' -57 NC_005178.1 + 31300 0.67 0.429836
Target:  5'- gUGaCCCAGCGCCGggCuauGCGCcugGCg- -3'
miRNA:   3'- aGC-GGGUCGUGGCaaGu--CGCGa--UGaa -5'
23086 5' -57 NC_005178.1 + 23465 0.67 0.419018
Target:  5'- gCGCCCGGCgcgaagccggcccGCUGcUCGGCcgGCUGCUc -3'
miRNA:   3'- aGCGGGUCG-------------UGGCaAGUCG--CGAUGAa -5'
23086 5' -57 NC_005178.1 + 13889 0.67 0.382036
Target:  5'- cCGCCCGGCGugaaCGggcCAGCGCggACUa -3'
miRNA:   3'- aGCGGGUCGUg---GCaa-GUCGCGa-UGAa -5'
23086 5' -57 NC_005178.1 + 17492 0.67 0.382036
Target:  5'- -gGCCCAGC-Caug-CGGCGCUACa- -3'
miRNA:   3'- agCGGGUCGuGgcaaGUCGCGAUGaa -5'
23086 5' -57 NC_005178.1 + 1551 0.68 0.346433
Target:  5'- gUCGCCCucGGCcugGCCGgaagucggCAGCGUUGCg- -3'
miRNA:   3'- -AGCGGG--UCG---UGGCaa------GUCGCGAUGaa -5'
23086 5' -57 NC_005178.1 + 11545 0.68 0.329543
Target:  5'- aUCGCCCAGCGCCugaaacgUC-GCGCcgACg- -3'
miRNA:   3'- -AGCGGGUCGUGGca-----AGuCGCGa-UGaa -5'
23086 5' -57 NC_005178.1 + 30471 0.68 0.329543
Target:  5'- gUGCCguGCGCCaucuaugcGUUCGGCGCUcaGCa- -3'
miRNA:   3'- aGCGGguCGUGG--------CAAGUCGCGA--UGaa -5'
23086 5' -57 NC_005178.1 + 4483 0.69 0.321329
Target:  5'- cCGCCCAGCGCUaccggCAGUGgUGCg- -3'
miRNA:   3'- aGCGGGUCGUGGcaa--GUCGCgAUGaa -5'
23086 5' -57 NC_005178.1 + 7048 0.69 0.321329
Target:  5'- cUCGCCCAcaUACCGcg-AGCGCUGCUg -3'
miRNA:   3'- -AGCGGGUc-GUGGCaagUCGCGAUGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.