miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23087 5' -54.3 NC_005178.1 + 18196 0.68 0.531682
Target:  5'- uGCGCGGUGgcGUcuauggGCCGGgCCAaauggagaacauCAGCCa -3'
miRNA:   3'- gCGUGCCGCuuCA------UGGUC-GGU------------GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 2664 0.68 0.531682
Target:  5'- gGCGCGGUGGuggauaugAGUACCAcGUUuCGGCCc -3'
miRNA:   3'- gCGUGCCGCU--------UCAUGGU-CGGuGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 12666 0.68 0.531682
Target:  5'- gCGCGCuGGCGGGugGCCugguuGCCuGCGGCCu -3'
miRNA:   3'- -GCGUG-CCGCUUcaUGGu----CGG-UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 5743 0.68 0.542679
Target:  5'- cCGCAuCGGUGgcGgcCuCGGgCACGACCg -3'
miRNA:   3'- -GCGU-GCCGCuuCauG-GUCgGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 26181 0.68 0.564887
Target:  5'- gGCGCGGCGGug-GCC-GCUGCGGgCg -3'
miRNA:   3'- gCGUGCCGCUucaUGGuCGGUGUUgG- -5'
23087 5' -54.3 NC_005178.1 + 7831 0.68 0.542679
Target:  5'- aCGCGaaccucacaacCGGCGAGGU-CCAGUggCGCAuCCg -3'
miRNA:   3'- -GCGU-----------GCCGCUUCAuGGUCG--GUGUuGG- -5'
23087 5' -54.3 NC_005178.1 + 2984 0.68 0.55375
Target:  5'- aGCGCGGauggcugcCGAGcGUGCgCAGCCugGAgCg -3'
miRNA:   3'- gCGUGCC--------GCUU-CAUG-GUCGGugUUgG- -5'
23087 5' -54.3 NC_005178.1 + 24377 0.68 0.55375
Target:  5'- aGCA-GGUGGgcauGUucACCGcGCCGCAGCCg -3'
miRNA:   3'- gCGUgCCGCUu---CA--UGGU-CGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 30505 0.68 0.55375
Target:  5'- aGCGCucgcgguaugugGGCGAGGUGCCGGaCUucgggcuguGCAACa -3'
miRNA:   3'- gCGUG------------CCGCUUCAUGGUC-GG---------UGUUGg -5'
23087 5' -54.3 NC_005178.1 + 7747 0.68 0.569359
Target:  5'- aGCGCcuggcgguccuccagGGCGGAGU-CCAGuCCugGugCg -3'
miRNA:   3'- gCGUG---------------CCGCUUCAuGGUC-GGugUugG- -5'
23087 5' -54.3 NC_005178.1 + 8829 0.68 0.569359
Target:  5'- uCGCcCGGCGc-GUGCCGggugugagccccgacGCCAcCGACCg -3'
miRNA:   3'- -GCGuGCCGCuuCAUGGU---------------CGGU-GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 11714 0.69 0.454289
Target:  5'- uCGCugGGCGccGUccaacgagaacgacACCcgcgcauauGCCACGGCCg -3'
miRNA:   3'- -GCGugCCGCuuCA--------------UGGu--------CGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 21352 0.69 0.467645
Target:  5'- gGCAUGGCcGAG-GCCGGUCACcGCUc -3'
miRNA:   3'- gCGUGCCGcUUCaUGGUCGGUGuUGG- -5'
23087 5' -54.3 NC_005178.1 + 33545 0.69 0.496007
Target:  5'- uCGCAgCGGCGGacGGUGCgCAGCaCcuggggucggaacaGCGGCCg -3'
miRNA:   3'- -GCGU-GCCGCU--UCAUG-GUCG-G--------------UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 25580 0.69 0.457353
Target:  5'- aGCGCGcccGCGAacagcaGGUugCAGCCgagcaacgaGCGGCCg -3'
miRNA:   3'- gCGUGC---CGCU------UCAugGUCGG---------UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 14868 0.69 0.464545
Target:  5'- gGCGCGuGUGAcccgucccuuggcaAGcaaggcuCCAGCCGCGACCc -3'
miRNA:   3'- gCGUGC-CGCU--------------UCau-----GGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 15817 0.69 0.467645
Target:  5'- uGCAUGGaCGgcGU--CGGCCACGGCUa -3'
miRNA:   3'- gCGUGCC-GCuuCAugGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 17645 0.69 0.488577
Target:  5'- gCGC-CGGC-AAG-ACCGGCCAggUGACCg -3'
miRNA:   3'- -GCGuGCCGcUUCaUGGUCGGU--GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 18079 0.69 0.499207
Target:  5'- aGCAgcUGGCGA---ACCuGCCGCAGCg -3'
miRNA:   3'- gCGU--GCCGCUucaUGGuCGGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 2912 0.69 0.509939
Target:  5'- gCGCGCcucGGCcAGGU-CgAGCCGCAGCUg -3'
miRNA:   3'- -GCGUG---CCGcUUCAuGgUCGGUGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.