Results 41 - 60 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 11714 | 0.69 | 0.454289 |
Target: 5'- uCGCugGGCGccGUccaacgagaacgacACCcgcgcauauGCCACGGCCg -3' miRNA: 3'- -GCGugCCGCuuCA--------------UGGu--------CGGUGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 2912 | 0.69 | 0.509939 |
Target: 5'- gCGCGCcucGGCcAGGU-CgAGCCGCAGCUg -3' miRNA: 3'- -GCGUG---CCGcUUCAuGgUCGGUGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 21846 | 0.69 | 0.457353 |
Target: 5'- uGCGCGGCGGcucgauGGU-CCAGUCcaGGCCg -3' miRNA: 3'- gCGUGCCGCU------UCAuGGUCGGugUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 21352 | 0.69 | 0.467645 |
Target: 5'- gGCAUGGCcGAG-GCCGGUCACcGCUc -3' miRNA: 3'- gCGUGCCGcUUCaUGGUCGGUGuUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 33545 | 0.69 | 0.496007 |
Target: 5'- uCGCAgCGGCGGacGGUGCgCAGCaCcuggggucggaacaGCGGCCg -3' miRNA: 3'- -GCGU-GCCGCU--UCAUG-GUCG-G--------------UGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 8974 | 0.69 | 0.499207 |
Target: 5'- gGgAUGGCGggGaaUGCCGGCgACGcCCc -3' miRNA: 3'- gCgUGCCGCuuC--AUGGUCGgUGUuGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 18079 | 0.69 | 0.499207 |
Target: 5'- aGCAgcUGGCGA---ACCuGCCGCAGCg -3' miRNA: 3'- gCGU--GCCGCUucaUGGuCGGUGUUGg -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 17645 | 0.69 | 0.488577 |
Target: 5'- gCGC-CGGC-AAG-ACCGGCCAggUGACCg -3' miRNA: 3'- -GCGuGCCGcUUCaUGGUCGGU--GUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 15817 | 0.69 | 0.467645 |
Target: 5'- uGCAUGGaCGgcGU--CGGCCACGGCUa -3' miRNA: 3'- gCGUGCC-GCuuCAugGUCGGUGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 14868 | 0.69 | 0.464545 |
Target: 5'- gGCGCGuGUGAcccgucccuuggcaAGcaaggcuCCAGCCGCGACCc -3' miRNA: 3'- gCGUGC-CGCU--------------UCau-----GGUCGGUGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 4079 | 0.68 | 0.520766 |
Target: 5'- -cCACGGCGAccAGgugGCCgugGGCUACGACa -3' miRNA: 3'- gcGUGCCGCU--UCa--UGG---UCGGUGUUGg -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 28541 | 0.68 | 0.520766 |
Target: 5'- uGaCugGGCGggG-GCCGuccGCCGCGccACCg -3' miRNA: 3'- gC-GugCCGCuuCaUGGU---CGGUGU--UGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 16192 | 0.68 | 0.520766 |
Target: 5'- uGCuGCGaGCGGug-ACCGGCCuCGGCCa -3' miRNA: 3'- gCG-UGC-CGCUucaUGGUCGGuGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 20244 | 0.68 | 0.520766 |
Target: 5'- uCGCACGcCGAG----CGGCCGCGACCu -3' miRNA: 3'- -GCGUGCcGCUUcaugGUCGGUGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 7747 | 0.68 | 0.569359 |
Target: 5'- aGCGCcuggcgguccuccagGGCGGAGU-CCAGuCCugGugCg -3' miRNA: 3'- gCGUG---------------CCGCUUCAuGGUC-GGugUugG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 18196 | 0.68 | 0.531682 |
Target: 5'- uGCGCGGUGgcGUcuauggGCCGGgCCAaauggagaacauCAGCCa -3' miRNA: 3'- gCGUGCCGCuuCA------UGGUC-GGU------------GUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 24377 | 0.68 | 0.55375 |
Target: 5'- aGCA-GGUGGgcauGUucACCGcGCCGCAGCCg -3' miRNA: 3'- gCGUgCCGCUu---CA--UGGU-CGGUGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 30505 | 0.68 | 0.55375 |
Target: 5'- aGCGCucgcgguaugugGGCGAGGUGCCGGaCUucgggcuguGCAACa -3' miRNA: 3'- gCGUG------------CCGCUUCAUGGUC-GG---------UGUUGg -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 26181 | 0.68 | 0.564887 |
Target: 5'- gGCGCGGCGGug-GCC-GCUGCGGgCg -3' miRNA: 3'- gCGUGCCGCUucaUGGuCGGUGUUgG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 8829 | 0.68 | 0.569359 |
Target: 5'- uCGCcCGGCGc-GUGCCGggugugagccccgacGCCAcCGACCg -3' miRNA: 3'- -GCGuGCCGCuuCAUGGU---------------CGGU-GUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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