Results 61 - 80 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 2984 | 0.68 | 0.55375 |
Target: 5'- aGCGCGGauggcugcCGAGcGUGCgCAGCCugGAgCg -3' miRNA: 3'- gCGUGCC--------GCUU-CAUG-GUCGGugUUgG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 32269 | 0.68 | 0.564887 |
Target: 5'- uCGCGcCGGCccuGAacGGUGgCGGCCuCGGCCa -3' miRNA: 3'- -GCGU-GCCG---CU--UCAUgGUCGGuGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 24377 | 0.68 | 0.55375 |
Target: 5'- aGCA-GGUGGgcauGUucACCGcGCCGCAGCCg -3' miRNA: 3'- gCGUgCCGCUu---CA--UGGU-CGGUGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 9007 | 0.68 | 0.564887 |
Target: 5'- gGCGCGGCGGAcGgcccccgcCCAGUCAUGuagcGCCg -3' miRNA: 3'- gCGUGCCGCUU-Cau------GGUCGGUGU----UGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 26181 | 0.68 | 0.564887 |
Target: 5'- gGCGCGGCGGug-GCC-GCUGCGGgCg -3' miRNA: 3'- gCGUGCCGCUucaUGGuCGGUGUUgG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 28541 | 0.68 | 0.520766 |
Target: 5'- uGaCugGGCGggG-GCCGuccGCCGCGccACCg -3' miRNA: 3'- gC-GugCCGCuuCaUGGU---CGGUGU--UGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 30505 | 0.68 | 0.55375 |
Target: 5'- aGCGCucgcgguaugugGGCGAGGUGCCGGaCUucgggcuguGCAACa -3' miRNA: 3'- gCGUG------------CCGCUUCAUGGUC-GG---------UGUUGg -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 17064 | 0.68 | 0.519679 |
Target: 5'- gGgGCGGCGAccuucagcugggcGGUGgCGGCgGCGAUCu -3' miRNA: 3'- gCgUGCCGCU-------------UCAUgGUCGgUGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 29196 | 0.68 | 0.520766 |
Target: 5'- gCGCGCGGUugcGUGCCAuGUCACAcguCCu -3' miRNA: 3'- -GCGUGCCGcuuCAUGGU-CGGUGUu--GG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 5906 | 0.68 | 0.542679 |
Target: 5'- uGCGCGGUGcgcaccGGGUA-CAGUCGCgAGCCa -3' miRNA: 3'- gCGUGCCGC------UUCAUgGUCGGUG-UUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 26457 | 0.68 | 0.55375 |
Target: 5'- aGCGCGGCGc--UGCCGGCCGa---- -3' miRNA: 3'- gCGUGCCGCuucAUGGUCGGUguugg -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 33653 | 0.68 | 0.55375 |
Target: 5'- uCGUugGGgGucauGUGgCGGCgGCGGCCg -3' miRNA: 3'- -GCGugCCgCuu--CAUgGUCGgUGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 9207 | 0.68 | 0.55375 |
Target: 5'- uGCugGugauCGAAGacaACCAGCCACucccGCCa -3' miRNA: 3'- gCGugCc---GCUUCa--UGGUCGGUGu---UGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 24721 | 0.68 | 0.55264 |
Target: 5'- --aGCGGCGAgcGGUGCCAuaggagacGCCgaacaugGCGGCCg -3' miRNA: 3'- gcgUGCCGCU--UCAUGGU--------CGG-------UGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 35828 | 0.68 | 0.55153 |
Target: 5'- aGUuCGGCGAgcAGUGCaucgcggccguaAGCCACGcgGCCg -3' miRNA: 3'- gCGuGCCGCU--UCAUGg-----------UCGGUGU--UGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 4811 | 0.68 | 0.542679 |
Target: 5'- aCGCACGuuauGCGGcagcuauccacGGUcgGCCAGuCCACAucGCCa -3' miRNA: 3'- -GCGUGC----CGCU-----------UCA--UGGUC-GGUGU--UGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 31990 | 0.67 | 0.637143 |
Target: 5'- uGCGCGGCcAgcagaagccgcuaugGGUGCCGacccacGCCgACGACCu -3' miRNA: 3'- gCGUGCCGcU---------------UCAUGGU------CGG-UGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 32902 | 0.67 | 0.609925 |
Target: 5'- gGCugGGUGAucu-CCAGCgGCGuggucGCCg -3' miRNA: 3'- gCGugCCGCUucauGGUCGgUGU-----UGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 10258 | 0.67 | 0.598611 |
Target: 5'- aCGCAuCGGCc---UGCCGGCCACG-CUg -3' miRNA: 3'- -GCGU-GCCGcuucAUGGUCGGUGUuGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 35539 | 0.67 | 0.609925 |
Target: 5'- -aCugGGCGAAGcgcgACCgcauuGGCCAggcCGACCa -3' miRNA: 3'- gcGugCCGCUUCa---UGG-----UCGGU---GUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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