miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23087 5' -54.3 NC_005178.1 + 5906 0.68 0.542679
Target:  5'- uGCGCGGUGcgcaccGGGUA-CAGUCGCgAGCCa -3'
miRNA:   3'- gCGUGCCGC------UUCAUgGUCGGUG-UUGG- -5'
23087 5' -54.3 NC_005178.1 + 7831 0.68 0.542679
Target:  5'- aCGCGaaccucacaacCGGCGAGGU-CCAGUggCGCAuCCg -3'
miRNA:   3'- -GCGU-----------GCCGCUUCAuGGUCG--GUGUuGG- -5'
23087 5' -54.3 NC_005178.1 + 4811 0.68 0.542679
Target:  5'- aCGCACGuuauGCGGcagcuauccacGGUcgGCCAGuCCACAucGCCa -3'
miRNA:   3'- -GCGUGC----CGCU-----------UCA--UGGUC-GGUGU--UGG- -5'
23087 5' -54.3 NC_005178.1 + 35828 0.68 0.55153
Target:  5'- aGUuCGGCGAgcAGUGCaucgcggccguaAGCCACGcgGCCg -3'
miRNA:   3'- gCGuGCCGCU--UCAUGg-----------UCGGUGU--UGG- -5'
23087 5' -54.3 NC_005178.1 + 24721 0.68 0.55264
Target:  5'- --aGCGGCGAgcGGUGCCAuaggagacGCCgaacaugGCGGCCg -3'
miRNA:   3'- gcgUGCCGCU--UCAUGGU--------CGG-------UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 33653 0.68 0.55375
Target:  5'- uCGUugGGgGucauGUGgCGGCgGCGGCCg -3'
miRNA:   3'- -GCGugCCgCuu--CAUgGUCGgUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 26457 0.68 0.55375
Target:  5'- aGCGCGGCGc--UGCCGGCCGa---- -3'
miRNA:   3'- gCGUGCCGCuucAUGGUCGGUguugg -5'
23087 5' -54.3 NC_005178.1 + 30505 0.68 0.55375
Target:  5'- aGCGCucgcgguaugugGGCGAGGUGCCGGaCUucgggcuguGCAACa -3'
miRNA:   3'- gCGUG------------CCGCUUCAUGGUC-GG---------UGUUGg -5'
23087 5' -54.3 NC_005178.1 + 2984 0.68 0.55375
Target:  5'- aGCGCGGauggcugcCGAGcGUGCgCAGCCugGAgCg -3'
miRNA:   3'- gCGUGCC--------GCUU-CAUG-GUCGGugUUgG- -5'
23087 5' -54.3 NC_005178.1 + 24377 0.68 0.55375
Target:  5'- aGCA-GGUGGgcauGUucACCGcGCCGCAGCCg -3'
miRNA:   3'- gCGUgCCGCUu---CA--UGGU-CGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 9207 0.68 0.55375
Target:  5'- uGCugGugauCGAAGacaACCAGCCACucccGCCa -3'
miRNA:   3'- gCGugCc---GCUUCa--UGGUCGGUGu---UGG- -5'
23087 5' -54.3 NC_005178.1 + 9007 0.68 0.564887
Target:  5'- gGCGCGGCGGAcGgcccccgcCCAGUCAUGuagcGCCg -3'
miRNA:   3'- gCGUGCCGCUU-Cau------GGUCGGUGU----UGG- -5'
23087 5' -54.3 NC_005178.1 + 26181 0.68 0.564887
Target:  5'- gGCGCGGCGGug-GCC-GCUGCGGgCg -3'
miRNA:   3'- gCGUGCCGCUucaUGGuCGGUGUUgG- -5'
23087 5' -54.3 NC_005178.1 + 32269 0.68 0.564887
Target:  5'- uCGCGcCGGCccuGAacGGUGgCGGCCuCGGCCa -3'
miRNA:   3'- -GCGU-GCCG---CU--UCAUgGUCGGuGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 8829 0.68 0.569359
Target:  5'- uCGCcCGGCGc-GUGCCGggugugagccccgacGCCAcCGACCg -3'
miRNA:   3'- -GCGuGCCGCuuCAUGGU---------------CGGU-GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 7747 0.68 0.569359
Target:  5'- aGCGCcuggcgguccuccagGGCGGAGU-CCAGuCCugGugCg -3'
miRNA:   3'- gCGUG---------------CCGCUUCAuGGUC-GGugUugG- -5'
23087 5' -54.3 NC_005178.1 + 20206 0.67 0.587327
Target:  5'- aGC-CGGCGcGGGcUGCCgAGCUggGCGACCu -3'
miRNA:   3'- gCGuGCCGC-UUC-AUGG-UCGG--UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 2309 0.67 0.587327
Target:  5'- cCGCGC-GCGAGGgugACCGuGCCGCuGGCg -3'
miRNA:   3'- -GCGUGcCGCUUCa--UGGU-CGGUG-UUGg -5'
23087 5' -54.3 NC_005178.1 + 6748 0.67 0.587327
Target:  5'- aCGC-CGGCccAGGUcgaGGCCGCGACCg -3'
miRNA:   3'- -GCGuGCCGc-UUCAuggUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 28510 0.67 0.587327
Target:  5'- aGCGCGGCGcggcauugcuccAGGUcgaaGCCGGCaACGGCg -3'
miRNA:   3'- gCGUGCCGC------------UUCA----UGGUCGgUGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.