miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23087 5' -54.3 NC_005178.1 + 5743 0.68 0.542679
Target:  5'- cCGCAuCGGUGgcGgcCuCGGgCACGACCg -3'
miRNA:   3'- -GCGU-GCCGCuuCauG-GUCgGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 7831 0.68 0.542679
Target:  5'- aCGCGaaccucacaacCGGCGAGGU-CCAGUggCGCAuCCg -3'
miRNA:   3'- -GCGU-----------GCCGCUUCAuGGUCG--GUGUuGG- -5'
23087 5' -54.3 NC_005178.1 + 18196 0.68 0.531682
Target:  5'- uGCGCGGUGgcGUcuauggGCCGGgCCAaauggagaacauCAGCCa -3'
miRNA:   3'- gCGUGCCGCuuCA------UGGUC-GGU------------GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 2664 0.68 0.531682
Target:  5'- gGCGCGGUGGuggauaugAGUACCAcGUUuCGGCCc -3'
miRNA:   3'- gCGUGCCGCU--------UCAUGGU-CGGuGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 12666 0.68 0.531682
Target:  5'- gCGCGCuGGCGGGugGCCugguuGCCuGCGGCCu -3'
miRNA:   3'- -GCGUG-CCGCUUcaUGGu----CGG-UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 4079 0.68 0.520766
Target:  5'- -cCACGGCGAccAGgugGCCgugGGCUACGACa -3'
miRNA:   3'- gcGUGCCGCU--UCa--UGG---UCGGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 28541 0.68 0.520766
Target:  5'- uGaCugGGCGggG-GCCGuccGCCGCGccACCg -3'
miRNA:   3'- gC-GugCCGCuuCaUGGU---CGGUGU--UGG- -5'
23087 5' -54.3 NC_005178.1 + 16192 0.68 0.520766
Target:  5'- uGCuGCGaGCGGug-ACCGGCCuCGGCCa -3'
miRNA:   3'- gCG-UGC-CGCUucaUGGUCGGuGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 29196 0.68 0.520766
Target:  5'- gCGCGCGGUugcGUGCCAuGUCACAcguCCu -3'
miRNA:   3'- -GCGUGCCGcuuCAUGGU-CGGUGUu--GG- -5'
23087 5' -54.3 NC_005178.1 + 20244 0.68 0.520766
Target:  5'- uCGCACGcCGAG----CGGCCGCGACCu -3'
miRNA:   3'- -GCGUGCcGCUUcaugGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 17064 0.68 0.519679
Target:  5'- gGgGCGGCGAccuucagcugggcGGUGgCGGCgGCGAUCu -3'
miRNA:   3'- gCgUGCCGCU-------------UCAUgGUCGgUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 2912 0.69 0.509939
Target:  5'- gCGCGCcucGGCcAGGU-CgAGCCGCAGCUg -3'
miRNA:   3'- -GCGUG---CCGcUUCAuGgUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 8974 0.69 0.499207
Target:  5'- gGgAUGGCGggGaaUGCCGGCgACGcCCc -3'
miRNA:   3'- gCgUGCCGCuuC--AUGGUCGgUGUuGG- -5'
23087 5' -54.3 NC_005178.1 + 18079 0.69 0.499207
Target:  5'- aGCAgcUGGCGA---ACCuGCCGCAGCg -3'
miRNA:   3'- gCGU--GCCGCUucaUGGuCGGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 33545 0.69 0.496007
Target:  5'- uCGCAgCGGCGGacGGUGCgCAGCaCcuggggucggaacaGCGGCCg -3'
miRNA:   3'- -GCGU-GCCGCU--UCAUG-GUCG-G--------------UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 17645 0.69 0.488577
Target:  5'- gCGC-CGGC-AAG-ACCGGCCAggUGACCg -3'
miRNA:   3'- -GCGuGCCGcUUCaUGGUCGGU--GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 15817 0.69 0.467645
Target:  5'- uGCAUGGaCGgcGU--CGGCCACGGCUa -3'
miRNA:   3'- gCGUGCC-GCuuCAugGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 21352 0.69 0.467645
Target:  5'- gGCAUGGCcGAG-GCCGGUCACcGCUc -3'
miRNA:   3'- gCGUGCCGcUUCaUGGUCGGUGuUGG- -5'
23087 5' -54.3 NC_005178.1 + 14868 0.69 0.464545
Target:  5'- gGCGCGuGUGAcccgucccuuggcaAGcaaggcuCCAGCCGCGACCc -3'
miRNA:   3'- gCGUGC-CGCU--------------UCau-----GGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 25580 0.69 0.457353
Target:  5'- aGCGCGcccGCGAacagcaGGUugCAGCCgagcaacgaGCGGCCg -3'
miRNA:   3'- gCGUGC---CGCU------UCAugGUCGG---------UGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.