miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23087 5' -54.3 NC_005178.1 + 11714 0.69 0.454289
Target:  5'- uCGCugGGCGccGUccaacgagaacgacACCcgcgcauauGCCACGGCCg -3'
miRNA:   3'- -GCGugCCGCuuCA--------------UGGu--------CGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 12666 0.68 0.531682
Target:  5'- gCGCGCuGGCGGGugGCCugguuGCCuGCGGCCu -3'
miRNA:   3'- -GCGUG-CCGCUUcaUGGu----CGG-UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 13402 0.66 0.666593
Target:  5'- aGguCGGCGGggAGUACCucgcccGUCACGgaGCCc -3'
miRNA:   3'- gCguGCCGCU--UCAUGGu-----CGGUGU--UGG- -5'
23087 5' -54.3 NC_005178.1 + 14674 0.8 0.100013
Target:  5'- cCGCAuCGGCGAua-GCCugGGCCACGACCg -3'
miRNA:   3'- -GCGU-GCCGCUucaUGG--UCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 14868 0.69 0.464545
Target:  5'- gGCGCGuGUGAcccgucccuuggcaAGcaaggcuCCAGCCGCGACCc -3'
miRNA:   3'- gCGUGC-CGCU--------------UCau-----GGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 15312 0.66 0.643949
Target:  5'- gGCuuGGCGGuAGUugCGGCUuuGCGuGCCa -3'
miRNA:   3'- gCGugCCGCU-UCAugGUCGG--UGU-UGG- -5'
23087 5' -54.3 NC_005178.1 + 15366 0.69 0.457353
Target:  5'- uGC-CGGUGGAGccauagGCCAGCUGCcagaAGCCg -3'
miRNA:   3'- gCGuGCCGCUUCa-----UGGUCGGUG----UUGG- -5'
23087 5' -54.3 NC_005178.1 + 15817 0.69 0.467645
Target:  5'- uGCAUGGaCGgcGU--CGGCCACGGCUa -3'
miRNA:   3'- gCGUGCC-GCuuCAugGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 15973 0.74 0.246279
Target:  5'- uCGCG-GGCGAGGUAcuCCAGCCGuuCGGCUg -3'
miRNA:   3'- -GCGUgCCGCUUCAU--GGUCGGU--GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 16144 0.66 0.666593
Target:  5'- gGCuCGG-GAAGUACCcGCC-CGGCa -3'
miRNA:   3'- gCGuGCCgCUUCAUGGuCGGuGUUGg -5'
23087 5' -54.3 NC_005178.1 + 16192 0.68 0.520766
Target:  5'- uGCuGCGaGCGGug-ACCGGCCuCGGCCa -3'
miRNA:   3'- gCG-UGC-CGCUucaUGGUCGGuGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 16555 0.7 0.437142
Target:  5'- cCGCccACGGCGAacccGGUAgCGuucGCCACGACg -3'
miRNA:   3'- -GCG--UGCCGCU----UCAUgGU---CGGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 16594 0.74 0.239779
Target:  5'- gCGC-CGGCGAAG-ACCuggacguuGGCCGCuACCg -3'
miRNA:   3'- -GCGuGCCGCUUCaUGG--------UCGGUGuUGG- -5'
23087 5' -54.3 NC_005178.1 + 16606 0.73 0.2788
Target:  5'- aGCugGGCGuccAGGUGCCGGUCaacuggguccaggaGCAGCUg -3'
miRNA:   3'- gCGugCCGC---UUCAUGGUCGG--------------UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 17064 0.68 0.519679
Target:  5'- gGgGCGGCGAccuucagcugggcGGUGgCGGCgGCGAUCu -3'
miRNA:   3'- gCgUGCCGCU-------------UCAUgGUCGgUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 17329 0.72 0.353006
Target:  5'- gGCGgGGcCGAGGUcgcCCAGCUcgGCAGCCc -3'
miRNA:   3'- gCGUgCC-GCUUCAu--GGUCGG--UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 17645 0.69 0.488577
Target:  5'- gCGC-CGGC-AAG-ACCGGCCAggUGACCg -3'
miRNA:   3'- -GCGuGCCGcUUCaUGGUCGGU--GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 17861 0.71 0.388959
Target:  5'- cCGCccuCGGCGAGGU-CCAGgacgugcuCCugGACCc -3'
miRNA:   3'- -GCGu--GCCGCUUCAuGGUC--------GGugUUGG- -5'
23087 5' -54.3 NC_005178.1 + 18023 0.66 0.643949
Target:  5'- gGC-UGGCGuGGUAUCGGCCAgugacACCg -3'
miRNA:   3'- gCGuGCCGCuUCAUGGUCGGUgu---UGG- -5'
23087 5' -54.3 NC_005178.1 + 18079 0.69 0.499207
Target:  5'- aGCAgcUGGCGA---ACCuGCCGCAGCg -3'
miRNA:   3'- gCGU--GCCGCUucaUGGuCGGUGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.