Results 81 - 100 of 121 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 24143 | 0.66 | 0.689099 |
Target: 5'- cCGUgACGGgCGAGGUACUccCCGcCGACCu -3' miRNA: 3'- -GCG-UGCC-GCUUCAUGGucGGU-GUUGG- -5' |
|||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 24290 | 0.7 | 0.426246 |
Target: 5'- gCGCcuACGGCGAgguccaacugcugGGUcugccgacGCCGGCCcCGACCc -3' miRNA: 3'- -GCG--UGCCGCU-------------UCA--------UGGUCGGuGUUGG- -5' |
|||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 24377 | 0.68 | 0.55375 |
Target: 5'- aGCA-GGUGGgcauGUucACCGcGCCGCAGCCg -3' miRNA: 3'- gCGUgCCGCUu---CA--UGGU-CGGUGUUGG- -5' |
|||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 24721 | 0.68 | 0.55264 |
Target: 5'- --aGCGGCGAgcGGUGCCAuaggagacGCCgaacaugGCGGCCg -3' miRNA: 3'- gcgUGCCGCU--UCAUGGU--------CGG-------UGUUGG- -5' |
|||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 25056 | 0.67 | 0.62126 |
Target: 5'- cCGCACGGUGucccAGUGcaguCCGGCgCAgaGGCCg -3' miRNA: 3'- -GCGUGCCGCu---UCAU----GGUCG-GUg-UUGG- -5' |
|||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 25122 | 0.66 | 0.677869 |
Target: 5'- uGCgGCGGCaucGggGUugucAUCAGUCACcGCCa -3' miRNA: 3'- gCG-UGCCG---CuuCA----UGGUCGGUGuUGG- -5' |
|||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 25343 | 0.7 | 0.42723 |
Target: 5'- cCGC-UGGCGAccaUGCCAGCCAgGcugGCCg -3' miRNA: 3'- -GCGuGCCGCUuc-AUGGUCGGUgU---UGG- -5' |
|||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 25580 | 0.69 | 0.457353 |
Target: 5'- aGCGCGcccGCGAacagcaGGUugCAGCCgagcaacgaGCGGCCg -3' miRNA: 3'- gCGUGC---CGCU------UCAugGUCGG---------UGUUGG- -5' |
|||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 25626 | 0.66 | 0.689099 |
Target: 5'- gGCuGCGGCGAAa-GCCAccGCCGaguuCGACCg -3' miRNA: 3'- gCG-UGCCGCUUcaUGGU--CGGU----GUUGG- -5' |
|||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 25781 | 0.72 | 0.335932 |
Target: 5'- gGCcuGCGGCGGA--ACCcccauggcucgGGCCACGGCCg -3' miRNA: 3'- gCG--UGCCGCUUcaUGG-----------UCGGUGUUGG- -5' |
|||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 26181 | 0.68 | 0.564887 |
Target: 5'- gGCGCGGCGGug-GCC-GCUGCGGgCg -3' miRNA: 3'- gCGUGCCGCUucaUGGuCGGUGUUgG- -5' |
|||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 26457 | 0.68 | 0.55375 |
Target: 5'- aGCGCGGCGc--UGCCGGCCGa---- -3' miRNA: 3'- gCGUGCCGCuucAUGGUCGGUguugg -5' |
|||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 27239 | 0.72 | 0.353006 |
Target: 5'- gCGuCACcgaGGCGAAGaACC-GCCugGACCa -3' miRNA: 3'- -GC-GUG---CCGCUUCaUGGuCGGugUUGG- -5' |
|||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 27356 | 0.78 | 0.133632 |
Target: 5'- aGCGCGGCGAAcugAUCAGCCAgAACa -3' miRNA: 3'- gCGUGCCGCUUca-UGGUCGGUgUUGg -5' |
|||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 27452 | 0.72 | 0.335932 |
Target: 5'- -cCACGGCGGcccAGcgcAUCAGCCugGACCa -3' miRNA: 3'- gcGUGCCGCU---UCa--UGGUCGGugUUGG- -5' |
|||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 27894 | 0.76 | 0.187546 |
Target: 5'- gGCuCGGCGAAGccACCGGCCGCGcagAUCa -3' miRNA: 3'- gCGuGCCGCUUCa-UGGUCGGUGU---UGG- -5' |
|||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 28510 | 0.67 | 0.587327 |
Target: 5'- aGCGCGGCGcggcauugcuccAGGUcgaaGCCGGCaACGGCg -3' miRNA: 3'- gCGUGCCGC------------UUCA----UGGUCGgUGUUGg -5' |
|||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 28541 | 0.68 | 0.520766 |
Target: 5'- uGaCugGGCGggG-GCCGuccGCCGCGccACCg -3' miRNA: 3'- gC-GugCCGCuuCaUGGU---CGGUGU--UGG- -5' |
|||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 29030 | 0.67 | 0.598611 |
Target: 5'- aGCuACGGCGA--UACCGcCCugGACUa -3' miRNA: 3'- gCG-UGCCGCUucAUGGUcGGugUUGG- -5' |
|||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 29196 | 0.68 | 0.520766 |
Target: 5'- gCGCGCGGUugcGUGCCAuGUCACAcguCCu -3' miRNA: 3'- -GCGUGCCGcuuCAUGGU-CGGUGUu--GG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home