miRNA display CGI


Results 101 - 120 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23087 5' -54.3 NC_005178.1 + 29521 0.67 0.63147
Target:  5'- gGCACgauGGCGAAGUccucgauGCCggugucagggucAGCCccgGCAGCCc -3'
miRNA:   3'- gCGUG---CCGCUUCA-------UGG------------UCGG---UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 30276 0.67 0.598611
Target:  5'- aGCgGCGGCGGcagcGUGCUgcGGCUagACAGCCu -3'
miRNA:   3'- gCG-UGCCGCUu---CAUGG--UCGG--UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 30505 0.68 0.55375
Target:  5'- aGCGCucgcgguaugugGGCGAGGUGCCGGaCUucgggcuguGCAACa -3'
miRNA:   3'- gCGUG------------CCGCUUCAUGGUC-GG---------UGUUGg -5'
23087 5' -54.3 NC_005178.1 + 31050 0.66 0.643949
Target:  5'- gCGCACGGUGGcggcGGUgACCuGGCCG-AACUg -3'
miRNA:   3'- -GCGUGCCGCU----UCA-UGG-UCGGUgUUGG- -5'
23087 5' -54.3 NC_005178.1 + 31687 0.66 0.643949
Target:  5'- uGgGCGGcCGAGG-GCCGGUguaGCGGCCu -3'
miRNA:   3'- gCgUGCC-GCUUCaUGGUCGg--UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 31750 0.73 0.303618
Target:  5'- aGCGCcuGGCccGAGGUaauGCCGGCgACGACCu -3'
miRNA:   3'- gCGUG--CCG--CUUCA---UGGUCGgUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 31792 0.75 0.227209
Target:  5'- uGCugGGCGAcacggucGUGCCcgaGGCCGCcACCg -3'
miRNA:   3'- gCGugCCGCUu------CAUGG---UCGGUGuUGG- -5'
23087 5' -54.3 NC_005178.1 + 31990 0.67 0.637143
Target:  5'- uGCGCGGCcAgcagaagccgcuaugGGUGCCGacccacGCCgACGACCu -3'
miRNA:   3'- gCGUGCCGcU---------------UCAUGGU------CGG-UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 32269 0.68 0.564887
Target:  5'- uCGCGcCGGCccuGAacGGUGgCGGCCuCGGCCa -3'
miRNA:   3'- -GCGU-GCCG---CU--UCAUgGUCGGuGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 32902 0.67 0.609925
Target:  5'- gGCugGGUGAucu-CCAGCgGCGuggucGCCg -3'
miRNA:   3'- gCGugCCGCUucauGGUCGgUGU-----UGG- -5'
23087 5' -54.3 NC_005178.1 + 33545 0.69 0.496007
Target:  5'- uCGCAgCGGCGGacGGUGCgCAGCaCcuggggucggaacaGCGGCCg -3'
miRNA:   3'- -GCGU-GCCGCU--UCAUG-GUCG-G--------------UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 33574 0.72 0.327624
Target:  5'- gGCAUcgaGGcCGAcGUGCUGGUCGCGACCg -3'
miRNA:   3'- gCGUG---CC-GCUuCAUGGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 33653 0.68 0.55375
Target:  5'- uCGUugGGgGucauGUGgCGGCgGCGGCCg -3'
miRNA:   3'- -GCGugCCgCuu--CAUgGUCGgUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 33921 0.71 0.388031
Target:  5'- uGCuCGGCGGccGGUGCCGGCUuuccgggGCGuuACCa -3'
miRNA:   3'- gCGuGCCGCU--UCAUGGUCGG-------UGU--UGG- -5'
23087 5' -54.3 NC_005178.1 + 34820 0.66 0.666593
Target:  5'- uGC-CGGCGAcaaccggcguGGcGCC-GCCACcACCg -3'
miRNA:   3'- gCGuGCCGCU----------UCaUGGuCGGUGuUGG- -5'
23087 5' -54.3 NC_005178.1 + 34987 0.66 0.666593
Target:  5'- cCGCGCuGGcCGAGGcgccgACCAGCCugucGCAgaGCUa -3'
miRNA:   3'- -GCGUG-CC-GCUUCa----UGGUCGG----UGU--UGG- -5'
23087 5' -54.3 NC_005178.1 + 35259 0.72 0.344393
Target:  5'- gCGCGCGGCugcgccGAuaccGUACCGGCCaaGCAucugGCCg -3'
miRNA:   3'- -GCGUGCCG------CUu---CAUGGUCGG--UGU----UGG- -5'
23087 5' -54.3 NC_005178.1 + 35539 0.67 0.609925
Target:  5'- -aCugGGCGAAGcgcgACCgcauuGGCCAggcCGACCa -3'
miRNA:   3'- gcGugCCGCUUCa---UGG-----UCGGU---GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 35828 0.68 0.55153
Target:  5'- aGUuCGGCGAgcAGUGCaucgcggccguaAGCCACGcgGCCg -3'
miRNA:   3'- gCGuGCCGCU--UCAUGg-----------UCGGUGU--UGG- -5'
23087 5' -54.3 NC_005178.1 + 36886 0.72 0.339298
Target:  5'- cCGUACuucuacaugacucuaGGCGggGUugCGGCUAUGGCUg -3'
miRNA:   3'- -GCGUG---------------CCGCuuCAugGUCGGUGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.