miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23087 5' -54.3 NC_005178.1 + 29521 0.67 0.63147
Target:  5'- gGCACgauGGCGAAGUccucgauGCCggugucagggucAGCCccgGCAGCCc -3'
miRNA:   3'- gCGUG---CCGCUUCA-------UGG------------UCGG---UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 29196 0.68 0.520766
Target:  5'- gCGCGCGGUugcGUGCCAuGUCACAcguCCu -3'
miRNA:   3'- -GCGUGCCGcuuCAUGGU-CGGUGUu--GG- -5'
23087 5' -54.3 NC_005178.1 + 29030 0.67 0.598611
Target:  5'- aGCuACGGCGA--UACCGcCCugGACUa -3'
miRNA:   3'- gCG-UGCCGCUucAUGGUcGGugUUGG- -5'
23087 5' -54.3 NC_005178.1 + 28541 0.68 0.520766
Target:  5'- uGaCugGGCGggG-GCCGuccGCCGCGccACCg -3'
miRNA:   3'- gC-GugCCGCuuCaUGGU---CGGUGU--UGG- -5'
23087 5' -54.3 NC_005178.1 + 28510 0.67 0.587327
Target:  5'- aGCGCGGCGcggcauugcuccAGGUcgaaGCCGGCaACGGCg -3'
miRNA:   3'- gCGUGCCGC------------UUCA----UGGUCGgUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 27894 0.76 0.187546
Target:  5'- gGCuCGGCGAAGccACCGGCCGCGcagAUCa -3'
miRNA:   3'- gCGuGCCGCUUCa-UGGUCGGUGU---UGG- -5'
23087 5' -54.3 NC_005178.1 + 27452 0.72 0.335932
Target:  5'- -cCACGGCGGcccAGcgcAUCAGCCugGACCa -3'
miRNA:   3'- gcGUGCCGCU---UCa--UGGUCGGugUUGG- -5'
23087 5' -54.3 NC_005178.1 + 27356 0.78 0.133632
Target:  5'- aGCGCGGCGAAcugAUCAGCCAgAACa -3'
miRNA:   3'- gCGUGCCGCUUca-UGGUCGGUgUUGg -5'
23087 5' -54.3 NC_005178.1 + 27239 0.72 0.353006
Target:  5'- gCGuCACcgaGGCGAAGaACC-GCCugGACCa -3'
miRNA:   3'- -GC-GUG---CCGCUUCaUGGuCGGugUUGG- -5'
23087 5' -54.3 NC_005178.1 + 26457 0.68 0.55375
Target:  5'- aGCGCGGCGc--UGCCGGCCGa---- -3'
miRNA:   3'- gCGUGCCGCuucAUGGUCGGUguugg -5'
23087 5' -54.3 NC_005178.1 + 26181 0.68 0.564887
Target:  5'- gGCGCGGCGGug-GCC-GCUGCGGgCg -3'
miRNA:   3'- gCGUGCCGCUucaUGGuCGGUGUUgG- -5'
23087 5' -54.3 NC_005178.1 + 25781 0.72 0.335932
Target:  5'- gGCcuGCGGCGGA--ACCcccauggcucgGGCCACGGCCg -3'
miRNA:   3'- gCG--UGCCGCUUcaUGG-----------UCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 25626 0.66 0.689099
Target:  5'- gGCuGCGGCGAAa-GCCAccGCCGaguuCGACCg -3'
miRNA:   3'- gCG-UGCCGCUUcaUGGU--CGGU----GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 25580 0.69 0.457353
Target:  5'- aGCGCGcccGCGAacagcaGGUugCAGCCgagcaacgaGCGGCCg -3'
miRNA:   3'- gCGUGC---CGCU------UCAugGUCGG---------UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 25343 0.7 0.42723
Target:  5'- cCGC-UGGCGAccaUGCCAGCCAgGcugGCCg -3'
miRNA:   3'- -GCGuGCCGCUuc-AUGGUCGGUgU---UGG- -5'
23087 5' -54.3 NC_005178.1 + 25122 0.66 0.677869
Target:  5'- uGCgGCGGCaucGggGUugucAUCAGUCACcGCCa -3'
miRNA:   3'- gCG-UGCCG---CuuCA----UGGUCGGUGuUGG- -5'
23087 5' -54.3 NC_005178.1 + 25056 0.67 0.62126
Target:  5'- cCGCACGGUGucccAGUGcaguCCGGCgCAgaGGCCg -3'
miRNA:   3'- -GCGUGCCGCu---UCAU----GGUCG-GUg-UUGG- -5'
23087 5' -54.3 NC_005178.1 + 24721 0.68 0.55264
Target:  5'- --aGCGGCGAgcGGUGCCAuaggagacGCCgaacaugGCGGCCg -3'
miRNA:   3'- gcgUGCCGCU--UCAUGGU--------CGG-------UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 24377 0.68 0.55375
Target:  5'- aGCA-GGUGGgcauGUucACCGcGCCGCAGCCg -3'
miRNA:   3'- gCGUgCCGCUu---CA--UGGU-CGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 24290 0.7 0.426246
Target:  5'- gCGCcuACGGCGAgguccaacugcugGGUcugccgacGCCGGCCcCGACCc -3'
miRNA:   3'- -GCG--UGCCGCU-------------UCA--------UGGUCGGuGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.