miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23087 5' -54.3 NC_005178.1 + 24143 0.66 0.689099
Target:  5'- cCGUgACGGgCGAGGUACUccCCGcCGACCu -3'
miRNA:   3'- -GCG-UGCC-GCUUCAUGGucGGU-GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 23465 0.66 0.666593
Target:  5'- gCGCcCGGCGcgaaGCCGGCCcgcugcuCGGCCg -3'
miRNA:   3'- -GCGuGCCGCuucaUGGUCGGu------GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 22804 0.8 0.100013
Target:  5'- aGUACGGCGAGGcguccauccGCCAGCUgaGCGACCg -3'
miRNA:   3'- gCGUGCCGCUUCa--------UGGUCGG--UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 21846 0.69 0.457353
Target:  5'- uGCGCGGCGGcucgauGGU-CCAGUCcaGGCCg -3'
miRNA:   3'- gCGUGCCGCU------UCAuGGUCGGugUUGG- -5'
23087 5' -54.3 NC_005178.1 + 21665 0.66 0.677869
Target:  5'- gGC-CGGUGGucgaagGCCuGCgGCAACCa -3'
miRNA:   3'- gCGuGCCGCUuca---UGGuCGgUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 21573 0.67 0.632605
Target:  5'- aGCcgaACGGCuGGAGUACCucGcCCGCGAUg -3'
miRNA:   3'- gCG---UGCCG-CUUCAUGGu-C-GGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 21495 0.66 0.643949
Target:  5'- gGUACGGCcag--GCCAGCacgcggaACAGCCc -3'
miRNA:   3'- gCGUGCCGcuucaUGGUCGg------UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 21352 0.69 0.467645
Target:  5'- gGCAUGGCcGAG-GCCGGUCACcGCUc -3'
miRNA:   3'- gCGUGCCGcUUCaUGGUCGGUGuUGG- -5'
23087 5' -54.3 NC_005178.1 + 21110 0.67 0.598611
Target:  5'- aGCgugGCGGCGAGcUGgCGGgcauCCGCAGCCa -3'
miRNA:   3'- gCG---UGCCGCUUcAUgGUC----GGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 20859 0.72 0.353006
Target:  5'- aGUugGGCGAugccuGcGCCGGCCugAucGCCc -3'
miRNA:   3'- gCGugCCGCUu----CaUGGUCGGugU--UGG- -5'
23087 5' -54.3 NC_005178.1 + 20502 0.74 0.252925
Target:  5'- cCGCAUGGCGAAGaugGCCcGCagauCGGCCu -3'
miRNA:   3'- -GCGUGCCGCUUCa--UGGuCGgu--GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 20244 0.68 0.520766
Target:  5'- uCGCACGcCGAG----CGGCCGCGACCu -3'
miRNA:   3'- -GCGUGCcGCUUcaugGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 20206 0.67 0.587327
Target:  5'- aGC-CGGCGcGGGcUGCCgAGCUggGCGACCu -3'
miRNA:   3'- gCGuGCCGC-UUC-AUGG-UCGG--UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 20140 0.66 0.643949
Target:  5'- uCGUauGCGGCGGcauAGcgcCCGGCCAUguaGGCCg -3'
miRNA:   3'- -GCG--UGCCGCU---UCau-GGUCGGUG---UUGG- -5'
23087 5' -54.3 NC_005178.1 + 19949 0.7 0.407814
Target:  5'- -cCACGGCGAc--GCCAGCgGCcGCCg -3'
miRNA:   3'- gcGUGCCGCUucaUGGUCGgUGuUGG- -5'
23087 5' -54.3 NC_005178.1 + 19471 0.71 0.379748
Target:  5'- gCGCuGCGGC-AGGUucGCCAGCUgcucgcgaGCGACCg -3'
miRNA:   3'- -GCG-UGCCGcUUCA--UGGUCGG--------UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 19166 0.71 0.379748
Target:  5'- gCGCaucaGCGGCaGGGUGUCGGUUACAGCCg -3'
miRNA:   3'- -GCG----UGCCGcUUCAUGGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 18825 0.66 0.667722
Target:  5'- gGCACaaugugccuaaucuaGCGucaUGCCAGCCACAACg -3'
miRNA:   3'- gCGUGc--------------CGCuucAUGGUCGGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 18500 0.73 0.303618
Target:  5'- gCGCgaGCGGCGAAGggGCgCGGCgCGCAcCCg -3'
miRNA:   3'- -GCG--UGCCGCUUCa-UG-GUCG-GUGUuGG- -5'
23087 5' -54.3 NC_005178.1 + 18436 0.67 0.613324
Target:  5'- aCGCuuCGGCGGAGcgagccucaucguCCAGCCAguccgcaUAGCCu -3'
miRNA:   3'- -GCGu-GCCGCUUCau-----------GGUCGGU-------GUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.