Results 81 - 100 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 11714 | 0.69 | 0.454289 |
Target: 5'- uCGCugGGCGccGUccaacgagaacgacACCcgcgcauauGCCACGGCCg -3' miRNA: 3'- -GCGugCCGCuuCA--------------UGGu--------CGGUGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 11683 | 0.73 | 0.286146 |
Target: 5'- cCGCAuggccUGGCGGuacugaccugccgaAaUGCCGGCCACGGCCa -3' miRNA: 3'- -GCGU-----GCCGCU--------------UcAUGGUCGGUGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 11185 | 0.77 | 0.158531 |
Target: 5'- gGuCGCGGUGAuuuccgacAGUACC-GCCACGGCCu -3' miRNA: 3'- gC-GUGCCGCU--------UCAUGGuCGGUGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 10410 | 0.73 | 0.303618 |
Target: 5'- aGCgGCGGCGAuauuuuCCGGCCGCAGgCg -3' miRNA: 3'- gCG-UGCCGCUucau--GGUCGGUGUUgG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 10258 | 0.67 | 0.598611 |
Target: 5'- aCGCAuCGGCc---UGCCGGCCACG-CUg -3' miRNA: 3'- -GCGU-GCCGcuucAUGGUCGGUGUuGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 9517 | 0.66 | 0.666593 |
Target: 5'- gGUGCGGaCGAAGUcauCCAGCga-GGCCu -3' miRNA: 3'- gCGUGCC-GCUUCAu--GGUCGgugUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 9336 | 0.66 | 0.677869 |
Target: 5'- uGCGCcuGCGAcgAGUGCCuGgCACGGCg -3' miRNA: 3'- gCGUGc-CGCU--UCAUGGuCgGUGUUGg -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 9207 | 0.68 | 0.55375 |
Target: 5'- uGCugGugauCGAAGacaACCAGCCACucccGCCa -3' miRNA: 3'- gCGugCc---GCUUCa--UGGUCGGUGu---UGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 9092 | 0.72 | 0.335932 |
Target: 5'- uGCAUGGCGGAugccgACCGGaUUACGACCu -3' miRNA: 3'- gCGUGCCGCUUca---UGGUC-GGUGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 9007 | 0.68 | 0.564887 |
Target: 5'- gGCGCGGCGGAcGgcccccgcCCAGUCAUGuagcGCCg -3' miRNA: 3'- gCGUGCCGCUU-Cau------GGUCGGUGU----UGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 8974 | 0.69 | 0.499207 |
Target: 5'- gGgAUGGCGggGaaUGCCGGCgACGcCCc -3' miRNA: 3'- gCgUGCCGCuuC--AUGGUCGgUGUuGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 8829 | 0.68 | 0.569359 |
Target: 5'- uCGCcCGGCGc-GUGCCGggugugagccccgacGCCAcCGACCg -3' miRNA: 3'- -GCGuGCCGCuuCAUGGU---------------CGGU-GUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 8658 | 0.66 | 0.689099 |
Target: 5'- uCGUA-GGCcugc--CCAGCCGCGACCa -3' miRNA: 3'- -GCGUgCCGcuucauGGUCGGUGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 8606 | 0.74 | 0.252925 |
Target: 5'- gCGCACGGCGAuggccGUGCCGGaCGCGGg- -3' miRNA: 3'- -GCGUGCCGCUu----CAUGGUCgGUGUUgg -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 7831 | 0.68 | 0.542679 |
Target: 5'- aCGCGaaccucacaacCGGCGAGGU-CCAGUggCGCAuCCg -3' miRNA: 3'- -GCGU-----------GCCGCUUCAuGGUCG--GUGUuGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 7747 | 0.68 | 0.569359 |
Target: 5'- aGCGCcuggcgguccuccagGGCGGAGU-CCAGuCCugGugCg -3' miRNA: 3'- gCGUG---------------CCGCUUCAuGGUC-GGugUugG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 7629 | 0.66 | 0.676743 |
Target: 5'- uGC-CGGCGAgcugccauugauuGGaACCGGCguugaACGACCa -3' miRNA: 3'- gCGuGCCGCU-------------UCaUGGUCGg----UGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 7242 | 0.66 | 0.665463 |
Target: 5'- aGUcCGGCGAugGGcUACCgucgaggcugucuAGCCGCAGCa -3' miRNA: 3'- gCGuGCCGCU--UC-AUGG-------------UCGGUGUUGg -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 6952 | 0.66 | 0.677869 |
Target: 5'- aGC-CGGCGAGGcaaucgGCaugAGCCGuuCGACCg -3' miRNA: 3'- gCGuGCCGCUUCa-----UGg--UCGGU--GUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 6748 | 0.67 | 0.587327 |
Target: 5'- aCGC-CGGCccAGGUcgaGGCCGCGACCg -3' miRNA: 3'- -GCGuGCCGc-UUCAuggUCGGUGUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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