miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23087 5' -54.3 NC_005178.1 + 28541 0.68 0.520766
Target:  5'- uGaCugGGCGggG-GCCGuccGCCGCGccACCg -3'
miRNA:   3'- gC-GugCCGCuuCaUGGU---CGGUGU--UGG- -5'
23087 5' -54.3 NC_005178.1 + 17329 0.72 0.353006
Target:  5'- gGCGgGGcCGAGGUcgcCCAGCUcgGCAGCCc -3'
miRNA:   3'- gCGUgCC-GCUUCAu--GGUCGG--UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 27239 0.72 0.353006
Target:  5'- gCGuCACcgaGGCGAAGaACC-GCCugGACCa -3'
miRNA:   3'- -GC-GUG---CCGCUUCaUGGuCGGugUUGG- -5'
23087 5' -54.3 NC_005178.1 + 31750 0.73 0.303618
Target:  5'- aGCGCcuGGCccGAGGUaauGCCGGCgACGACCu -3'
miRNA:   3'- gCGUG--CCG--CUUCA---UGGUCGgUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 5587 0.71 0.358247
Target:  5'- aGCGCGGCGAAGaggucguuuuccaACUGGuCCGCGACa -3'
miRNA:   3'- gCGUGCCGCUUCa------------UGGUC-GGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 16144 0.66 0.666593
Target:  5'- gGCuCGG-GAAGUACCcGCC-CGGCa -3'
miRNA:   3'- gCGuGCCgCUUCAUGGuCGGuGUUGg -5'
23087 5' -54.3 NC_005178.1 + 4079 0.68 0.520766
Target:  5'- -cCACGGCGAccAGgugGCCgugGGCUACGACa -3'
miRNA:   3'- gcGUGCCGCU--UCa--UGG---UCGGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 2912 0.69 0.509939
Target:  5'- gCGCGCcucGGCcAGGU-CgAGCCGCAGCUg -3'
miRNA:   3'- -GCGUG---CCGcUUCAuGgUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 18079 0.69 0.499207
Target:  5'- aGCAgcUGGCGA---ACCuGCCGCAGCg -3'
miRNA:   3'- gCGU--GCCGCUucaUGGuCGGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 16192 0.68 0.520766
Target:  5'- uGCuGCGaGCGGug-ACCGGCCuCGGCCa -3'
miRNA:   3'- gCG-UGC-CGCUucaUGGUCGGuGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 6408 0.66 0.655282
Target:  5'- uGuCGCGGCGAGGcGC--GCCGCGAUg -3'
miRNA:   3'- gC-GUGCCGCUUCaUGguCGGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 4876 0.66 0.655282
Target:  5'- -cCugGGUGAaauGGgcaucaaGCCGGCCGgGACCa -3'
miRNA:   3'- gcGugCCGCU---UCa------UGGUCGGUgUUGG- -5'
23087 5' -54.3 NC_005178.1 + 23465 0.66 0.666593
Target:  5'- gCGCcCGGCGcgaaGCCGGCCcgcugcuCGGCCg -3'
miRNA:   3'- -GCGuGCCGCuucaUGGUCGGu------GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 34820 0.66 0.666593
Target:  5'- uGC-CGGCGAcaaccggcguGGcGCC-GCCACcACCg -3'
miRNA:   3'- gCGuGCCGCU----------UCaUGGuCGGUGuUGG- -5'
23087 5' -54.3 NC_005178.1 + 34987 0.66 0.666593
Target:  5'- cCGCGCuGGcCGAGGcgccgACCAGCCugucGCAgaGCUa -3'
miRNA:   3'- -GCGUG-CC-GCUUCa----UGGUCGG----UGU--UGG- -5'
23087 5' -54.3 NC_005178.1 + 18825 0.66 0.667722
Target:  5'- gGCACaaugugccuaaucuaGCGucaUGCCAGCCACAACg -3'
miRNA:   3'- gCGUGc--------------CGCuucAUGGUCGGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 6952 0.66 0.677869
Target:  5'- aGC-CGGCGAGGcaaucgGCaugAGCCGuuCGACCg -3'
miRNA:   3'- gCGuGCCGCUUCa-----UGg--UCGGU--GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 9336 0.66 0.677869
Target:  5'- uGCGCcuGCGAcgAGUGCCuGgCACGGCg -3'
miRNA:   3'- gCGUGc-CGCU--UCAUGGuCgGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 24143 0.66 0.689099
Target:  5'- cCGUgACGGgCGAGGUACUccCCGcCGACCu -3'
miRNA:   3'- -GCG-UGCC-GCUUCAUGGucGGU-GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 37373 0.66 0.689099
Target:  5'- gGUAUGGaCGAGGUGCUuagacagaGGCUGCGGgCg -3'
miRNA:   3'- gCGUGCC-GCUUCAUGG--------UCGGUGUUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.