miRNA display CGI


Results 81 - 100 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23087 5' -54.3 NC_005178.1 + 32902 0.67 0.609925
Target:  5'- gGCugGGUGAucu-CCAGCgGCGuggucGCCg -3'
miRNA:   3'- gCGugCCGCUucauGGUCGgUGU-----UGG- -5'
23087 5' -54.3 NC_005178.1 + 30276 0.67 0.598611
Target:  5'- aGCgGCGGCGGcagcGUGCUgcGGCUagACAGCCu -3'
miRNA:   3'- gCG-UGCCGCUu---CAUGG--UCGG--UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 29030 0.67 0.598611
Target:  5'- aGCuACGGCGA--UACCGcCCugGACUa -3'
miRNA:   3'- gCG-UGCCGCUucAUGGUcGGugUUGG- -5'
23087 5' -54.3 NC_005178.1 + 10258 0.67 0.598611
Target:  5'- aCGCAuCGGCc---UGCCGGCCACG-CUg -3'
miRNA:   3'- -GCGU-GCCGcuucAUGGUCGGUGUuGG- -5'
23087 5' -54.3 NC_005178.1 + 8829 0.68 0.569359
Target:  5'- uCGCcCGGCGc-GUGCCGggugugagccccgacGCCAcCGACCg -3'
miRNA:   3'- -GCGuGCCGCuuCAUGGU---------------CGGU-GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 7747 0.68 0.569359
Target:  5'- aGCGCcuggcgguccuccagGGCGGAGU-CCAGuCCugGugCg -3'
miRNA:   3'- gCGUG---------------CCGCUUCAuGGUC-GGugUugG- -5'
23087 5' -54.3 NC_005178.1 + 23465 0.66 0.666593
Target:  5'- gCGCcCGGCGcgaaGCCGGCCcgcugcuCGGCCg -3'
miRNA:   3'- -GCGuGCCGCuucaUGGUCGGu------GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 34820 0.66 0.666593
Target:  5'- uGC-CGGCGAcaaccggcguGGcGCC-GCCACcACCg -3'
miRNA:   3'- gCGuGCCGCU----------UCaUGGuCGGUGuUGG- -5'
23087 5' -54.3 NC_005178.1 + 34987 0.66 0.666593
Target:  5'- cCGCGCuGGcCGAGGcgccgACCAGCCugucGCAgaGCUa -3'
miRNA:   3'- -GCGUG-CC-GCUUCa----UGGUCGG----UGU--UGG- -5'
23087 5' -54.3 NC_005178.1 + 4079 0.68 0.520766
Target:  5'- -cCACGGCGAccAGgugGCCgugGGCUACGACa -3'
miRNA:   3'- gcGUGCCGCU--UCa--UGG---UCGGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 16192 0.68 0.520766
Target:  5'- uGCuGCGaGCGGug-ACCGGCCuCGGCCa -3'
miRNA:   3'- gCG-UGC-CGCUucaUGGUCGGuGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 20244 0.68 0.520766
Target:  5'- uCGCACGcCGAG----CGGCCGCGACCu -3'
miRNA:   3'- -GCGUGCcGCUUcaugGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 28541 0.68 0.520766
Target:  5'- uGaCugGGCGggG-GCCGuccGCCGCGccACCg -3'
miRNA:   3'- gC-GugCCGCuuCaUGGU---CGGUGU--UGG- -5'
23087 5' -54.3 NC_005178.1 + 6408 0.66 0.655282
Target:  5'- uGuCGCGGCGAGGcGC--GCCGCGAUg -3'
miRNA:   3'- gC-GUGCCGCUUCaUGguCGGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 37373 0.66 0.689099
Target:  5'- gGUAUGGaCGAGGUGCUuagacagaGGCUGCGGgCg -3'
miRNA:   3'- gCGUGCC-GCUUCAUGG--------UCGGUGUUgG- -5'
23087 5' -54.3 NC_005178.1 + 25626 0.66 0.689099
Target:  5'- gGCuGCGGCGAAa-GCCAccGCCGaguuCGACCg -3'
miRNA:   3'- gCG-UGCCGCUUcaUGGU--CGGU----GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 24143 0.66 0.689099
Target:  5'- cCGUgACGGgCGAGGUACUccCCGcCGACCu -3'
miRNA:   3'- -GCG-UGCC-GCUUCAUGGucGGU-GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 9336 0.66 0.677869
Target:  5'- uGCGCcuGCGAcgAGUGCCuGgCACGGCg -3'
miRNA:   3'- gCGUGc-CGCU--UCAUGGuCgGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 6952 0.66 0.677869
Target:  5'- aGC-CGGCGAGGcaaucgGCaugAGCCGuuCGACCg -3'
miRNA:   3'- gCGuGCCGCUUCa-----UGg--UCGGU--GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 18825 0.66 0.667722
Target:  5'- gGCACaaugugccuaaucuaGCGucaUGCCAGCCACAACg -3'
miRNA:   3'- gCGUGc--------------CGCuucAUGGUCGGUGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.