miRNA display CGI


Results 101 - 120 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23087 5' -54.3 NC_005178.1 + 34987 0.66 0.666593
Target:  5'- cCGCGCuGGcCGAGGcgccgACCAGCCugucGCAgaGCUa -3'
miRNA:   3'- -GCGUG-CC-GCUUCa----UGGUCGG----UGU--UGG- -5'
23087 5' -54.3 NC_005178.1 + 18825 0.66 0.667722
Target:  5'- gGCACaaugugccuaaucuaGCGucaUGCCAGCCACAACg -3'
miRNA:   3'- gCGUGc--------------CGCuucAUGGUCGGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 6952 0.66 0.677869
Target:  5'- aGC-CGGCGAGGcaaucgGCaugAGCCGuuCGACCg -3'
miRNA:   3'- gCGuGCCGCUUCa-----UGg--UCGGU--GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 9336 0.66 0.677869
Target:  5'- uGCGCcuGCGAcgAGUGCCuGgCACGGCg -3'
miRNA:   3'- gCGUGc-CGCU--UCAUGGuCgGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 24143 0.66 0.689099
Target:  5'- cCGUgACGGgCGAGGUACUccCCGcCGACCu -3'
miRNA:   3'- -GCG-UGCC-GCUUCAUGGucGGU-GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 31990 0.67 0.637143
Target:  5'- uGCGCGGCcAgcagaagccgcuaugGGUGCCGacccacGCCgACGACCu -3'
miRNA:   3'- gCGUGCCGcU---------------UCAUGGU------CGG-UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 35539 0.67 0.609925
Target:  5'- -aCugGGCGAAGcgcgACCgcauuGGCCAggcCGACCa -3'
miRNA:   3'- gcGugCCGCUUCa---UGG-----UCGGU---GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 30276 0.67 0.598611
Target:  5'- aGCgGCGGCGGcagcGUGCUgcGGCUagACAGCCu -3'
miRNA:   3'- gCG-UGCCGCUu---CAUGG--UCGG--UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 2664 0.68 0.531682
Target:  5'- gGCGCGGUGGuggauaugAGUACCAcGUUuCGGCCc -3'
miRNA:   3'- gCGUGCCGCU--------UCAUGGU-CGGuGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 12666 0.68 0.531682
Target:  5'- gCGCGCuGGCGGGugGCCugguuGCCuGCGGCCu -3'
miRNA:   3'- -GCGUG-CCGCUUcaUGGu----CGG-UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 5743 0.68 0.542679
Target:  5'- cCGCAuCGGUGgcGgcCuCGGgCACGACCg -3'
miRNA:   3'- -GCGU-GCCGCuuCauG-GUCgGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 7831 0.68 0.542679
Target:  5'- aCGCGaaccucacaacCGGCGAGGU-CCAGUggCGCAuCCg -3'
miRNA:   3'- -GCGU-----------GCCGCUUCAuGGUCG--GUGUuGG- -5'
23087 5' -54.3 NC_005178.1 + 2984 0.68 0.55375
Target:  5'- aGCGCGGauggcugcCGAGcGUGCgCAGCCugGAgCg -3'
miRNA:   3'- gCGUGCC--------GCUU-CAUG-GUCGGugUUgG- -5'
23087 5' -54.3 NC_005178.1 + 24377 0.68 0.55375
Target:  5'- aGCA-GGUGGgcauGUucACCGcGCCGCAGCCg -3'
miRNA:   3'- gCGUgCCGCUu---CA--UGGU-CGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 30505 0.68 0.55375
Target:  5'- aGCGCucgcgguaugugGGCGAGGUGCCGGaCUucgggcuguGCAACa -3'
miRNA:   3'- gCGUG------------CCGCUUCAUGGUC-GG---------UGUUGg -5'
23087 5' -54.3 NC_005178.1 + 26181 0.68 0.564887
Target:  5'- gGCGCGGCGGug-GCC-GCUGCGGgCg -3'
miRNA:   3'- gCGUGCCGCUucaUGGuCGGUGUUgG- -5'
23087 5' -54.3 NC_005178.1 + 7747 0.68 0.569359
Target:  5'- aGCGCcuggcgguccuccagGGCGGAGU-CCAGuCCugGugCg -3'
miRNA:   3'- gCGUG---------------CCGCUUCAuGGUC-GGugUugG- -5'
23087 5' -54.3 NC_005178.1 + 8829 0.68 0.569359
Target:  5'- uCGCcCGGCGc-GUGCCGggugugagccccgacGCCAcCGACCg -3'
miRNA:   3'- -GCGuGCCGCuuCAUGGU---------------CGGU-GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 10258 0.67 0.598611
Target:  5'- aCGCAuCGGCc---UGCCGGCCACG-CUg -3'
miRNA:   3'- -GCGU-GCCGcuucAUGGUCGGUGUuGG- -5'
23087 5' -54.3 NC_005178.1 + 29030 0.67 0.598611
Target:  5'- aGCuACGGCGA--UACCGcCCugGACUa -3'
miRNA:   3'- gCG-UGCCGCUucAUGGUcGGugUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.