miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23087 5' -54.3 NC_005178.1 + 4876 0.66 0.655282
Target:  5'- -cCugGGUGAaauGGgcaucaaGCCGGCCGgGACCa -3'
miRNA:   3'- gcGugCCGCU---UCa------UGGUCGGUgUUGG- -5'
23087 5' -54.3 NC_005178.1 + 20140 0.66 0.643949
Target:  5'- uCGUauGCGGCGGcauAGcgcCCGGCCAUguaGGCCg -3'
miRNA:   3'- -GCG--UGCCGCU---UCau-GGUCGGUG---UUGG- -5'
23087 5' -54.3 NC_005178.1 + 31687 0.66 0.643949
Target:  5'- uGgGCGGcCGAGG-GCCGGUguaGCGGCCu -3'
miRNA:   3'- gCgUGCC-GCUUCaUGGUCGg--UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 21495 0.66 0.643949
Target:  5'- gGUACGGCcag--GCCAGCacgcggaACAGCCc -3'
miRNA:   3'- gCGUGCCGcuucaUGGUCGg------UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 15312 0.66 0.643949
Target:  5'- gGCuuGGCGGuAGUugCGGCUuuGCGuGCCa -3'
miRNA:   3'- gCGugCCGCU-UCAugGUCGG--UGU-UGG- -5'
23087 5' -54.3 NC_005178.1 + 31050 0.66 0.643949
Target:  5'- gCGCACGGUGGcggcGGUgACCuGGCCG-AACUg -3'
miRNA:   3'- -GCGUGCCGCU----UCA-UGG-UCGGUgUUGG- -5'
23087 5' -54.3 NC_005178.1 + 5119 0.66 0.643949
Target:  5'- gCGcCACGGCuGAAcUGauaCAGCCGC-ACCg -3'
miRNA:   3'- -GC-GUGCCG-CUUcAUg--GUCGGUGuUGG- -5'
23087 5' -54.3 NC_005178.1 + 6148 0.66 0.643949
Target:  5'- aGCGCcGCGAAG-GCUAGCacaAGCCa -3'
miRNA:   3'- gCGUGcCGCUUCaUGGUCGgugUUGG- -5'
23087 5' -54.3 NC_005178.1 + 18023 0.66 0.643949
Target:  5'- gGC-UGGCGuGGUAUCGGCCAgugacACCg -3'
miRNA:   3'- gCGuGCCGCuUCAUGGUCGGUgu---UGG- -5'
23087 5' -54.3 NC_005178.1 + 31990 0.67 0.637143
Target:  5'- uGCGCGGCcAgcagaagccgcuaugGGUGCCGacccacGCCgACGACCu -3'
miRNA:   3'- gCGUGCCGcU---------------UCAUGGU------CGG-UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 21573 0.67 0.632605
Target:  5'- aGCcgaACGGCuGGAGUACCucGcCCGCGAUg -3'
miRNA:   3'- gCG---UGCCG-CUUCAUGGu-C-GGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 29521 0.67 0.63147
Target:  5'- gGCACgauGGCGAAGUccucgauGCCggugucagggucAGCCccgGCAGCCc -3'
miRNA:   3'- gCGUG---CCGCUUCA-------UGG------------UCGG---UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 25056 0.67 0.62126
Target:  5'- cCGCACGGUGucccAGUGcaguCCGGCgCAgaGGCCg -3'
miRNA:   3'- -GCGUGCCGCu---UCAU----GGUCG-GUg-UUGG- -5'
23087 5' -54.3 NC_005178.1 + 5976 0.67 0.62126
Target:  5'- gGC-CGGCGGcGGUACU-GCCuuGACCu -3'
miRNA:   3'- gCGuGCCGCU-UCAUGGuCGGugUUGG- -5'
23087 5' -54.3 NC_005178.1 + 18436 0.67 0.613324
Target:  5'- aCGCuuCGGCGGAGcgagccucaucguCCAGCCAguccgcaUAGCCu -3'
miRNA:   3'- -GCGu-GCCGCUUCau-----------GGUCGGU-------GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 32902 0.67 0.609925
Target:  5'- gGCugGGUGAucu-CCAGCgGCGuggucGCCg -3'
miRNA:   3'- gCGugCCGCUucauGGUCGgUGU-----UGG- -5'
23087 5' -54.3 NC_005178.1 + 35539 0.67 0.609925
Target:  5'- -aCugGGCGAAGcgcgACCgcauuGGCCAggcCGACCa -3'
miRNA:   3'- gcGugCCGCUUCa---UGG-----UCGGU---GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 21110 0.67 0.598611
Target:  5'- aGCgugGCGGCGAGcUGgCGGgcauCCGCAGCCa -3'
miRNA:   3'- gCG---UGCCGCUUcAUgGUC----GGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 10258 0.67 0.598611
Target:  5'- aCGCAuCGGCc---UGCCGGCCACG-CUg -3'
miRNA:   3'- -GCGU-GCCGcuucAUGGUCGGUGUuGG- -5'
23087 5' -54.3 NC_005178.1 + 29030 0.67 0.598611
Target:  5'- aGCuACGGCGA--UACCGcCCugGACUa -3'
miRNA:   3'- gCG-UGCCGCUucAUGGUcGGugUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.