Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23088 | 3' | -58.5 | NC_005178.1 | + | 17077 | 0.75 | 0.102306 |
Target: 5'- uCAGCuGGGCGGUGGCGgCgGCGAucuGCu -3' miRNA: 3'- -GUCGuUCCGCCAUCGC-GgCGCUuc-CG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 17179 | 0.71 | 0.205538 |
Target: 5'- cCGGCuucAGGGCGGUcAGgGCCGCaauGGCc -3' miRNA: 3'- -GUCG---UUCCGCCA-UCgCGGCGcuuCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 17327 | 0.67 | 0.35161 |
Target: 5'- aCGGCGGGGCcgaGGUcgcccagcucggcAGC-CCGCGccGGCu -3' miRNA: 3'- -GUCGUUCCG---CCA-------------UCGcGGCGCuuCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 18628 | 0.68 | 0.30398 |
Target: 5'- cCAGCAguuGGGCGGUcAG-GCUGgGcGAGGCc -3' miRNA: 3'- -GUCGU---UCCGCCA-UCgCGGCgC-UUCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 19174 | 0.69 | 0.260114 |
Target: 5'- gCGGCAGGGUgucGGUuacagccgcguagAGUGCCGCc-AGGCg -3' miRNA: 3'- -GUCGUUCCG---CCA-------------UCGCGGCGcuUCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 19446 | 0.73 | 0.14377 |
Target: 5'- aCAGCAccauGGCGGgcugggccaGGCGCUGCGGcAGGUu -3' miRNA: 3'- -GUCGUu---CCGCCa--------UCGCGGCGCU-UCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 21378 | 0.69 | 0.277437 |
Target: 5'- gCAGCAGGGUuaccuucucuucgucGGgcGUGCCGgGcGGGUa -3' miRNA: 3'- -GUCGUUCCG---------------CCauCGCGGCgCuUCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 21785 | 0.66 | 0.434883 |
Target: 5'- cCAGCcAGGCG-----GCgGCGAAGGCa -3' miRNA: 3'- -GUCGuUCCGCcaucgCGgCGCUUCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 23222 | 0.67 | 0.361056 |
Target: 5'- aGGUcAGGaCGGUGcGgGCCGUgucGAAGGCc -3' miRNA: 3'- gUCGuUCC-GCCAU-CgCGGCG---CUUCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 23701 | 0.67 | 0.344013 |
Target: 5'- cCGGCAAGcCGGUGGCGCaggGCGAcgAGa- -3' miRNA: 3'- -GUCGUUCcGCCAUCGCGg--CGCU--UCcg -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 24128 | 0.7 | 0.234865 |
Target: 5'- --cCAAGGCGGcgGGCuCCGUGAcGGGCg -3' miRNA: 3'- gucGUUCCGCCa-UCGcGGCGCU-UCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 24779 | 0.68 | 0.319551 |
Target: 5'- cCGGuCGAGGaCGuaGGCGCgGCGcAGGGCg -3' miRNA: 3'- -GUC-GUUCC-GCcaUCGCGgCGC-UUCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 25411 | 0.69 | 0.289 |
Target: 5'- gCGGUAGGcGCGGgucuguGCGUCGgCGcAGGCg -3' miRNA: 3'- -GUCGUUC-CGCCau----CGCGGC-GCuUCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 25964 | 0.67 | 0.355882 |
Target: 5'- cCAGCAAGGCGGgcagaucaaggacagUuucgguGGCGUcggCGCGAcguuucAGGCg -3' miRNA: 3'- -GUCGUUCCGCC---------------A------UCGCG---GCGCU------UCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 26179 | 0.8 | 0.046531 |
Target: 5'- uCGGCGcGGCGGUGGcCGCUGCGGgcguGGCg -3' miRNA: 3'- -GUCGUuCCGCCAUC-GCGGCGCUu---CCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 26588 | 0.68 | 0.311692 |
Target: 5'- uCAGCAAGGCGauucgcUGGgGCCGCccaacuGGCc -3' miRNA: 3'- -GUCGUUCCGCc-----AUCgCGGCGcuu---CCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 26609 | 0.7 | 0.228731 |
Target: 5'- gGGCAggAGGCGGgccGCGCCGgauCGAcucGGCg -3' miRNA: 3'- gUCGU--UCCGCCau-CGCGGC---GCUu--CCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 26774 | 0.74 | 0.121403 |
Target: 5'- cCAGgAuGGCGGcGGCGUaguCGCGggGGCu -3' miRNA: 3'- -GUCgUuCCGCCaUCGCG---GCGCuuCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 28121 | 0.72 | 0.169843 |
Target: 5'- uGGCcuGGGCGGUGGCaCCGaUGgcGGCg -3' miRNA: 3'- gUCGu-UCCGCCAUCGcGGC-GCuuCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 28282 | 0.69 | 0.267626 |
Target: 5'- uCAGUggGGUGaccGGCGCUGCGGgagcugccgGGGCc -3' miRNA: 3'- -GUCGuuCCGCca-UCGCGGCGCU---------UCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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