miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23088 3' -58.5 NC_005178.1 + 3217 0.68 0.319551
Target:  5'- -cGCAAGGuCGGcaacgucaGCCGCGAggucGGGCg -3'
miRNA:   3'- guCGUUCC-GCCaucg----CGGCGCU----UCCG- -5'
23088 3' -58.5 NC_005178.1 + 4120 0.68 0.311692
Target:  5'- cCAGCAGGGUgugGGUcuaCGaCgGCGAGGGCc -3'
miRNA:   3'- -GUCGUUCCG---CCAuc-GC-GgCGCUUCCG- -5'
23088 3' -58.5 NC_005178.1 + 26588 0.68 0.311692
Target:  5'- uCAGCAAGGCGauucgcUGGgGCCGCccaacuGGCc -3'
miRNA:   3'- -GUCGUUCCGCc-----AUCgCGGCGcuu---CCG- -5'
23088 3' -58.5 NC_005178.1 + 34822 0.68 0.30398
Target:  5'- cCGGCGAcaaccGGC-GUGGCGCCGCcaccaccGGGCu -3'
miRNA:   3'- -GUCGUU-----CCGcCAUCGCGGCGcu-----UCCG- -5'
23088 3' -58.5 NC_005178.1 + 18628 0.68 0.30398
Target:  5'- cCAGCAguuGGGCGGUcAG-GCUGgGcGAGGCc -3'
miRNA:   3'- -GUCGU---UCCGCCA-UCgCGGCgC-UUCCG- -5'
23088 3' -58.5 NC_005178.1 + 25411 0.69 0.289
Target:  5'- gCGGUAGGcGCGGgucuguGCGUCGgCGcAGGCg -3'
miRNA:   3'- -GUCGUUC-CGCCau----CGCGGC-GCuUCCG- -5'
23088 3' -58.5 NC_005178.1 + 4359 0.69 0.289
Target:  5'- gAGCAAcucCGGUcgcgcAGCGCCGCGAcccuugaagugcAGGCc -3'
miRNA:   3'- gUCGUUcc-GCCA-----UCGCGGCGCU------------UCCG- -5'
23088 3' -58.5 NC_005178.1 + 2127 0.69 0.281729
Target:  5'- uCAGCGucAGGCugucGGUGGCgGCCaGCGccGGGGCc -3'
miRNA:   3'- -GUCGU--UCCG----CCAUCG-CGG-CGC--UUCCG- -5'
23088 3' -58.5 NC_005178.1 + 21378 0.69 0.277437
Target:  5'- gCAGCAGGGUuaccuucucuucgucGGgcGUGCCGgGcGGGUa -3'
miRNA:   3'- -GUCGUUCCG---------------CCauCGCGGCgCuUCCG- -5'
23088 3' -58.5 NC_005178.1 + 33840 0.69 0.2739
Target:  5'- uGGCcuGGCGGUccaugucGGCGCCGaUGuagccGGGCa -3'
miRNA:   3'- gUCGuuCCGCCA-------UCGCGGC-GCu----UCCG- -5'
23088 3' -58.5 NC_005178.1 + 28282 0.69 0.267626
Target:  5'- uCAGUggGGUGaccGGCGCUGCGGgagcugccgGGGCc -3'
miRNA:   3'- -GUCGuuCCGCca-UCGCGGCGCU---------UCCG- -5'
23088 3' -58.5 NC_005178.1 + 19174 0.69 0.260114
Target:  5'- gCGGCAGGGUgucGGUuacagccgcguagAGUGCCGCc-AGGCg -3'
miRNA:   3'- -GUCGUUCCG---CCA-------------UCGCGGCGcuUCCG- -5'
23088 3' -58.5 NC_005178.1 + 31305 0.7 0.247546
Target:  5'- cCAGCGccGGGCuaugcgccUGGCGCCGCGccgggaguucGAGGCg -3'
miRNA:   3'- -GUCGU--UCCGcc------AUCGCGGCGC----------UUCCG- -5'
23088 3' -58.5 NC_005178.1 + 33099 0.7 0.240502
Target:  5'- uCGGCAgggugaagaccuGGGCGGUGGUggcuuggguggugGCUGCGGucGGGUg -3'
miRNA:   3'- -GUCGU------------UCCGCCAUCG-------------CGGCGCU--UCCG- -5'
23088 3' -58.5 NC_005178.1 + 24128 0.7 0.234865
Target:  5'- --cCAAGGCGGcgGGCuCCGUGAcGGGCg -3'
miRNA:   3'- gucGUUCCGCCa-UCGcGGCGCU-UCCG- -5'
23088 3' -58.5 NC_005178.1 + 26609 0.7 0.228731
Target:  5'- gGGCAggAGGCGGgccGCGCCGgauCGAcucGGCg -3'
miRNA:   3'- gUCGU--UCCGCCau-CGCGGC---GCUu--CCG- -5'
23088 3' -58.5 NC_005178.1 + 17179 0.71 0.205538
Target:  5'- cCGGCuucAGGGCGGUcAGgGCCGCaauGGCc -3'
miRNA:   3'- -GUCG---UUCCGCCA-UCgCGGCGcuuCCG- -5'
23088 3' -58.5 NC_005178.1 + 16366 0.71 0.194723
Target:  5'- cCAGCGagucGGGCGGcGGCGCCuacGCccuGGGGCa -3'
miRNA:   3'- -GUCGU----UCCGCCaUCGCGG---CGc--UUCCG- -5'
23088 3' -58.5 NC_005178.1 + 7083 0.71 0.193144
Target:  5'- gGGCGAGGCGGUgaccucggucgAGUGCaGCGAGuaccuccagcggccGGCg -3'
miRNA:   3'- gUCGUUCCGCCA-----------UCGCGgCGCUU--------------CCG- -5'
23088 3' -58.5 NC_005178.1 + 28121 0.72 0.169843
Target:  5'- uGGCcuGGGCGGUGGCaCCGaUGgcGGCg -3'
miRNA:   3'- gUCGu-UCCGCCAUCGcGGC-GCuuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.