Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23088 | 5' | -48 | NC_005178.1 | + | 29495 | 0.66 | 0.962713 |
Target: 5'- cCCGCUgggcUGCGGCcgauaUGCGGGCAgcagUGa -3' miRNA: 3'- -GGUGAaa--GCGCCGug---AUGCUUGUa---AC- -5' |
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23088 | 5' | -48 | NC_005178.1 | + | 1804 | 0.66 | 0.958618 |
Target: 5'- -uGCcgUCGCGGaCACUGCGcagGACAa-- -3' miRNA: 3'- ggUGaaAGCGCC-GUGAUGC---UUGUaac -5' |
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23088 | 5' | -48 | NC_005178.1 | + | 2896 | 0.66 | 0.958618 |
Target: 5'- gCUACgggCGCGGCGgU-CGAACAc-- -3' miRNA: 3'- -GGUGaaaGCGCCGUgAuGCUUGUaac -5' |
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23088 | 5' | -48 | NC_005178.1 | + | 31413 | 0.66 | 0.954223 |
Target: 5'- -aGCcUUCGCGGCGCUACc-GCcUUGc -3' miRNA: 3'- ggUGaAAGCGCCGUGAUGcuUGuAAC- -5' |
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23088 | 5' | -48 | NC_005178.1 | + | 27554 | 0.67 | 0.939191 |
Target: 5'- gCCGgUUUUGCGGCACUuuuGGCGUc- -3' miRNA: 3'- -GGUgAAAGCGCCGUGAugcUUGUAac -5' |
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23088 | 5' | -48 | NC_005178.1 | + | 7052 | 0.67 | 0.933549 |
Target: 5'- cCCACauacCGCGaGCGCUGCuGAGCGc-- -3' miRNA: 3'- -GGUGaaa-GCGC-CGUGAUG-CUUGUaac -5' |
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23088 | 5' | -48 | NC_005178.1 | + | 30619 | 0.67 | 0.933549 |
Target: 5'- cCgGCUUUCGUcuGGCuGCUGCGGGCc--- -3' miRNA: 3'- -GgUGAAAGCG--CCG-UGAUGCUUGuaac -5' |
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23088 | 5' | -48 | NC_005178.1 | + | 26175 | 0.68 | 0.89981 |
Target: 5'- aUCAUcggCGCGGCgguggccGCUGCGGGCGUg- -3' miRNA: 3'- -GGUGaaaGCGCCG-------UGAUGCUUGUAac -5' |
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23088 | 5' | -48 | NC_005178.1 | + | 28504 | 0.68 | 0.885153 |
Target: 5'- aCCGCgagCGCGGCGCg----GCAUUGc -3' miRNA: 3'- -GGUGaaaGCGCCGUGaugcuUGUAAC- -5' |
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23088 | 5' | -48 | NC_005178.1 | + | 14534 | 0.7 | 0.832028 |
Target: 5'- cCCACUguggaaGCGGCGCaaguucaagGCGAuCAUUGa -3' miRNA: 3'- -GGUGAaag---CGCCGUGa--------UGCUuGUAAC- -5' |
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23088 | 5' | -48 | NC_005178.1 | + | 31367 | 0.7 | 0.82226 |
Target: 5'- aCCGCga--GCGGCAgCUACuGGACAUg- -3' miRNA: 3'- -GGUGaaagCGCCGU-GAUG-CUUGUAac -5' |
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23088 | 5' | -48 | NC_005178.1 | + | 28869 | 0.7 | 0.82226 |
Target: 5'- gCCAUcgaUGCGGCACaugGCGAACGUcuUGg -3' miRNA: 3'- -GGUGaaaGCGCCGUGa--UGCUUGUA--AC- -5' |
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23088 | 5' | -48 | NC_005178.1 | + | 8198 | 0.71 | 0.770202 |
Target: 5'- aCCAa-UUCGCGGCACgcuUACGAcaACGUg- -3' miRNA: 3'- -GGUgaAAGCGCCGUG---AUGCU--UGUAac -5' |
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23088 | 5' | -48 | NC_005178.1 | + | 5168 | 0.71 | 0.744768 |
Target: 5'- -aGCUUUCGCGGCugUuaaaacucaucgucACGAACcccuUUGa -3' miRNA: 3'- ggUGAAAGCGCCGugA--------------UGCUUGu---AAC- -5' |
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23088 | 5' | -48 | NC_005178.1 | + | 18397 | 0.74 | 0.60817 |
Target: 5'- gCCGCUgaugCGCGGCaucGCUGCuGAACuGUUGg -3' miRNA: 3'- -GGUGAaa--GCGCCG---UGAUG-CUUG-UAAC- -5' |
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23088 | 5' | -48 | NC_005178.1 | + | 5264 | 0.74 | 0.584592 |
Target: 5'- aCCACgucggUgGCGGCGCUACaGAGCGc-- -3' miRNA: 3'- -GGUGaa---AgCGCCGUGAUG-CUUGUaac -5' |
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23088 | 5' | -48 | NC_005178.1 | + | 33177 | 0.75 | 0.561196 |
Target: 5'- gCACUUcaagggUCGCGGCGCUGCGcGACcggaGUUGc -3' miRNA: 3'- gGUGAA------AGCGCCGUGAUGC-UUG----UAAC- -5' |
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23088 | 5' | -48 | NC_005178.1 | + | 6170 | 1.12 | 0.002422 |
Target: 5'- gCCACUUUCGCGGCACUACGAACAUUGa -3' miRNA: 3'- -GGUGAAAGCGCCGUGAUGCUUGUAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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