miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23088 5' -48 NC_005178.1 + 29495 0.66 0.962713
Target:  5'- cCCGCUgggcUGCGGCcgauaUGCGGGCAgcagUGa -3'
miRNA:   3'- -GGUGAaa--GCGCCGug---AUGCUUGUa---AC- -5'
23088 5' -48 NC_005178.1 + 1804 0.66 0.958618
Target:  5'- -uGCcgUCGCGGaCACUGCGcagGACAa-- -3'
miRNA:   3'- ggUGaaAGCGCC-GUGAUGC---UUGUaac -5'
23088 5' -48 NC_005178.1 + 2896 0.66 0.958618
Target:  5'- gCUACgggCGCGGCGgU-CGAACAc-- -3'
miRNA:   3'- -GGUGaaaGCGCCGUgAuGCUUGUaac -5'
23088 5' -48 NC_005178.1 + 31413 0.66 0.954223
Target:  5'- -aGCcUUCGCGGCGCUACc-GCcUUGc -3'
miRNA:   3'- ggUGaAAGCGCCGUGAUGcuUGuAAC- -5'
23088 5' -48 NC_005178.1 + 27554 0.67 0.939191
Target:  5'- gCCGgUUUUGCGGCACUuuuGGCGUc- -3'
miRNA:   3'- -GGUgAAAGCGCCGUGAugcUUGUAac -5'
23088 5' -48 NC_005178.1 + 30619 0.67 0.933549
Target:  5'- cCgGCUUUCGUcuGGCuGCUGCGGGCc--- -3'
miRNA:   3'- -GgUGAAAGCG--CCG-UGAUGCUUGuaac -5'
23088 5' -48 NC_005178.1 + 7052 0.67 0.933549
Target:  5'- cCCACauacCGCGaGCGCUGCuGAGCGc-- -3'
miRNA:   3'- -GGUGaaa-GCGC-CGUGAUG-CUUGUaac -5'
23088 5' -48 NC_005178.1 + 26175 0.68 0.89981
Target:  5'- aUCAUcggCGCGGCgguggccGCUGCGGGCGUg- -3'
miRNA:   3'- -GGUGaaaGCGCCG-------UGAUGCUUGUAac -5'
23088 5' -48 NC_005178.1 + 28504 0.68 0.885153
Target:  5'- aCCGCgagCGCGGCGCg----GCAUUGc -3'
miRNA:   3'- -GGUGaaaGCGCCGUGaugcuUGUAAC- -5'
23088 5' -48 NC_005178.1 + 14534 0.7 0.832028
Target:  5'- cCCACUguggaaGCGGCGCaaguucaagGCGAuCAUUGa -3'
miRNA:   3'- -GGUGAaag---CGCCGUGa--------UGCUuGUAAC- -5'
23088 5' -48 NC_005178.1 + 31367 0.7 0.82226
Target:  5'- aCCGCga--GCGGCAgCUACuGGACAUg- -3'
miRNA:   3'- -GGUGaaagCGCCGU-GAUG-CUUGUAac -5'
23088 5' -48 NC_005178.1 + 28869 0.7 0.82226
Target:  5'- gCCAUcgaUGCGGCACaugGCGAACGUcuUGg -3'
miRNA:   3'- -GGUGaaaGCGCCGUGa--UGCUUGUA--AC- -5'
23088 5' -48 NC_005178.1 + 8198 0.71 0.770202
Target:  5'- aCCAa-UUCGCGGCACgcuUACGAcaACGUg- -3'
miRNA:   3'- -GGUgaAAGCGCCGUG---AUGCU--UGUAac -5'
23088 5' -48 NC_005178.1 + 5168 0.71 0.744768
Target:  5'- -aGCUUUCGCGGCugUuaaaacucaucgucACGAACcccuUUGa -3'
miRNA:   3'- ggUGAAAGCGCCGugA--------------UGCUUGu---AAC- -5'
23088 5' -48 NC_005178.1 + 18397 0.74 0.60817
Target:  5'- gCCGCUgaugCGCGGCaucGCUGCuGAACuGUUGg -3'
miRNA:   3'- -GGUGAaa--GCGCCG---UGAUG-CUUG-UAAC- -5'
23088 5' -48 NC_005178.1 + 5264 0.74 0.584592
Target:  5'- aCCACgucggUgGCGGCGCUACaGAGCGc-- -3'
miRNA:   3'- -GGUGaa---AgCGCCGUGAUG-CUUGUaac -5'
23088 5' -48 NC_005178.1 + 33177 0.75 0.561196
Target:  5'- gCACUUcaagggUCGCGGCGCUGCGcGACcggaGUUGc -3'
miRNA:   3'- gGUGAA------AGCGCCGUGAUGC-UUG----UAAC- -5'
23088 5' -48 NC_005178.1 + 6170 1.12 0.002422
Target:  5'- gCCACUUUCGCGGCACUACGAACAUUGa -3'
miRNA:   3'- -GGUGAAAGCGCCGUGAUGCUUGUAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.