Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23090 | 3' | -59.4 | NC_005178.1 | + | 17206 | 0.66 | 0.35688 |
Target: 5'- uGGCCUcUGCCUCgguCGUGCcuucuucCAGCGAc- -3' miRNA: 3'- -CCGGGaACGGAG---GCACGc------GUCGCUag -5' |
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23090 | 3' | -59.4 | NC_005178.1 | + | 364 | 0.67 | 0.348404 |
Target: 5'- uGGCgucaaaCUcgGCCUCCaG-GCGCAGCgGGUCg -3' miRNA: 3'- -CCGg-----GAa-CGGAGG-CaCGCGUCG-CUAG- -5' |
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23090 | 3' | -59.4 | NC_005178.1 | + | 31810 | 0.67 | 0.340072 |
Target: 5'- uGCCCgagGCCgccaCCGa-UGCGGCGAUCu -3' miRNA: 3'- cCGGGaa-CGGa---GGCacGCGUCGCUAG- -5' |
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23090 | 3' | -59.4 | NC_005178.1 | + | 21822 | 0.68 | 0.300599 |
Target: 5'- cGGCCUUcucUGCggCCGaggcguUGCGCGGCGGcUCg -3' miRNA: 3'- -CCGGGA---ACGgaGGC------ACGCGUCGCU-AG- -5' |
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23090 | 3' | -59.4 | NC_005178.1 | + | 9575 | 0.68 | 0.28583 |
Target: 5'- uGCCCUgcGCCg-CGcUGCGCugGGCGGUCg -3' miRNA: 3'- cCGGGAa-CGGagGC-ACGCG--UCGCUAG- -5' |
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23090 | 3' | -59.4 | NC_005178.1 | + | 27638 | 0.68 | 0.278663 |
Target: 5'- uGGCCCUccagggucaacgUGCCgccgcugCCGUGgGCAuggGCGcgCa -3' miRNA: 3'- -CCGGGA------------ACGGa------GGCACgCGU---CGCuaG- -5' |
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23090 | 3' | -59.4 | NC_005178.1 | + | 7076 | 0.7 | 0.21472 |
Target: 5'- cGGCCCUgggcgaggcggUGaCCUCgGUcgaGUGCAGCGAg- -3' miRNA: 3'- -CCGGGA-----------AC-GGAGgCA---CGCGUCGCUag -5' |
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23090 | 3' | -59.4 | NC_005178.1 | + | 6498 | 0.71 | 0.163782 |
Target: 5'- cGGCCaggucaccGCCgccaCCGUGCGCAuGCGGUUg -3' miRNA: 3'- -CCGGgaa-----CGGa---GGCACGCGU-CGCUAG- -5' |
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23090 | 3' | -59.4 | NC_005178.1 | + | 8749 | 0.73 | 0.133365 |
Target: 5'- cGCCCUUGCCgugggcgacuuggCCagcGUGCggGCGGCGGUCu -3' miRNA: 3'- cCGGGAACGGa------------GG---CACG--CGUCGCUAG- -5' |
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23090 | 3' | -59.4 | NC_005178.1 | + | 8923 | 0.76 | 0.076264 |
Target: 5'- cGGCCCg-GCUUCCGUGCGCuGGgGGUg -3' miRNA: 3'- -CCGGGaaCGGAGGCACGCG-UCgCUAg -5' |
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23090 | 3' | -59.4 | NC_005178.1 | + | 6557 | 1.1 | 0.000176 |
Target: 5'- aGGCCCUUGCCUCCGUGCGCAGCGAUCc -3' miRNA: 3'- -CCGGGAACGGAGGCACGCGUCGCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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