miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23090 3' -59.4 NC_005178.1 + 17206 0.66 0.35688
Target:  5'- uGGCCUcUGCCUCgguCGUGCcuucuucCAGCGAc- -3'
miRNA:   3'- -CCGGGaACGGAG---GCACGc------GUCGCUag -5'
23090 3' -59.4 NC_005178.1 + 364 0.67 0.348404
Target:  5'- uGGCgucaaaCUcgGCCUCCaG-GCGCAGCgGGUCg -3'
miRNA:   3'- -CCGg-----GAa-CGGAGG-CaCGCGUCG-CUAG- -5'
23090 3' -59.4 NC_005178.1 + 31810 0.67 0.340072
Target:  5'- uGCCCgagGCCgccaCCGa-UGCGGCGAUCu -3'
miRNA:   3'- cCGGGaa-CGGa---GGCacGCGUCGCUAG- -5'
23090 3' -59.4 NC_005178.1 + 21822 0.68 0.300599
Target:  5'- cGGCCUUcucUGCggCCGaggcguUGCGCGGCGGcUCg -3'
miRNA:   3'- -CCGGGA---ACGgaGGC------ACGCGUCGCU-AG- -5'
23090 3' -59.4 NC_005178.1 + 9575 0.68 0.28583
Target:  5'- uGCCCUgcGCCg-CGcUGCGCugGGCGGUCg -3'
miRNA:   3'- cCGGGAa-CGGagGC-ACGCG--UCGCUAG- -5'
23090 3' -59.4 NC_005178.1 + 27638 0.68 0.278663
Target:  5'- uGGCCCUccagggucaacgUGCCgccgcugCCGUGgGCAuggGCGcgCa -3'
miRNA:   3'- -CCGGGA------------ACGGa------GGCACgCGU---CGCuaG- -5'
23090 3' -59.4 NC_005178.1 + 7076 0.7 0.21472
Target:  5'- cGGCCCUgggcgaggcggUGaCCUCgGUcgaGUGCAGCGAg- -3'
miRNA:   3'- -CCGGGA-----------AC-GGAGgCA---CGCGUCGCUag -5'
23090 3' -59.4 NC_005178.1 + 6498 0.71 0.163782
Target:  5'- cGGCCaggucaccGCCgccaCCGUGCGCAuGCGGUUg -3'
miRNA:   3'- -CCGGgaa-----CGGa---GGCACGCGU-CGCUAG- -5'
23090 3' -59.4 NC_005178.1 + 8749 0.73 0.133365
Target:  5'- cGCCCUUGCCgugggcgacuuggCCagcGUGCggGCGGCGGUCu -3'
miRNA:   3'- cCGGGAACGGa------------GG---CACG--CGUCGCUAG- -5'
23090 3' -59.4 NC_005178.1 + 8923 0.76 0.076264
Target:  5'- cGGCCCg-GCUUCCGUGCGCuGGgGGUg -3'
miRNA:   3'- -CCGGGaaCGGAGGCACGCG-UCgCUAg -5'
23090 3' -59.4 NC_005178.1 + 6557 1.1 0.000176
Target:  5'- aGGCCCUUGCCUCCGUGCGCAGCGAUCc -3'
miRNA:   3'- -CCGGGAACGGAGGCACGCGUCGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.