Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23090 | 5' | -51.9 | NC_005178.1 | + | 20386 | 0.67 | 0.738157 |
|
Target: 5'- cCUGA-AGCCggCCCUGGAcgccCAGGcGa -3' miRNA: 3'- -GACUaUCGGuaGGGACCUuu--GUCCuC- -5' |
|||||||
| 23090 | 5' | -51.9 | NC_005178.1 | + | 34124 | 0.67 | 0.738157 |
|
Target: 5'- -cGGUGGaCCAUCCC-GGAauucGACGGGu- -3' miRNA: 3'- gaCUAUC-GGUAGGGaCCU----UUGUCCuc -5' |
|||||||
| 23090 | 5' | -51.9 | NC_005178.1 | + | 24024 | 0.69 | 0.588053 |
|
Target: 5'- gCUGGaAGCCGaaauugcucaguUCaaacgCUGGGAACAGGAGa -3' miRNA: 3'- -GACUaUCGGU------------AGg----GACCUUUGUCCUC- -5' |
|||||||
| 23090 | 5' | -51.9 | NC_005178.1 | + | 18859 | 0.7 | 0.530778 |
|
Target: 5'- uUGAgcUGGCCGUUUCUGaGGAcCGGGAGg -3' miRNA: 3'- gACU--AUCGGUAGGGAC-CUUuGUCCUC- -5' |
|||||||
| 23090 | 5' | -51.9 | NC_005178.1 | + | 8614 | 0.7 | 0.51955 |
|
Target: 5'- -cGAUGGCCGUgCC-GGAcGCGGGGa -3' miRNA: 3'- gaCUAUCGGUAgGGaCCUuUGUCCUc -5' |
|||||||
| 23090 | 5' | -51.9 | NC_005178.1 | + | 18272 | 0.73 | 0.365739 |
|
Target: 5'- -cGAcgGGCUcgCCCUGGGccguuACAGGAGg -3' miRNA: 3'- gaCUa-UCGGuaGGGACCUu----UGUCCUC- -5' |
|||||||
| 23090 | 5' | -51.9 | NC_005178.1 | + | 14997 | 0.75 | 0.289746 |
|
Target: 5'- -aGGUGGCCAUCCgUGGc--CAGGGGc -3' miRNA: 3'- gaCUAUCGGUAGGgACCuuuGUCCUC- -5' |
|||||||
| 23090 | 5' | -51.9 | NC_005178.1 | + | 30071 | 0.76 | 0.239631 |
|
Target: 5'- gCUGAUcgguucgcuccaGGCCAgggugaugCCCUGGAAGCGGGuGa -3' miRNA: 3'- -GACUA------------UCGGUa-------GGGACCUUUGUCCuC- -5' |
|||||||
| 23090 | 5' | -51.9 | NC_005178.1 | + | 6601 | 1.1 | 0.001025 |
|
Target: 5'- gCUGAUAGCCAUCCCUGGAAACAGGAGg -3' miRNA: 3'- -GACUAUCGGUAGGGACCUUUGUCCUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home