miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23091 5' -57.3 NC_005178.1 + 1123 0.66 0.511041
Target:  5'- cACCG-CGGCAauagCC-CGCCAACUGg -3'
miRNA:   3'- -UGGCaGUCGUgguaGGaGCGGUUGGC- -5'
23091 5' -57.3 NC_005178.1 + 4427 0.66 0.511041
Target:  5'- gACCG-CAGcCACCAcCCaaGCCAccACCGc -3'
miRNA:   3'- -UGGCaGUC-GUGGUaGGagCGGU--UGGC- -5'
23091 5' -57.3 NC_005178.1 + 24878 0.66 0.511041
Target:  5'- gGCCG-CAGgcaaccaggcCACCcgCCagcgCGCCGGCCGc -3'
miRNA:   3'- -UGGCaGUC----------GUGGuaGGa---GCGGUUGGC- -5'
23091 5' -57.3 NC_005178.1 + 4921 0.66 0.511041
Target:  5'- gUCGaCGGCACCG--CUCGgCGACCGg -3'
miRNA:   3'- uGGCaGUCGUGGUagGAGCgGUUGGC- -5'
23091 5' -57.3 NC_005178.1 + 20884 0.66 0.511041
Target:  5'- gAUCGccCAGgACCG-CCUCGCCAuugGCUGg -3'
miRNA:   3'- -UGGCa-GUCgUGGUaGGAGCGGU---UGGC- -5'
23091 5' -57.3 NC_005178.1 + 12358 0.66 0.500473
Target:  5'- cCCGUCAacGUGCCGcCCagGCCAcuACCGg -3'
miRNA:   3'- uGGCAGU--CGUGGUaGGagCGGU--UGGC- -5'
23091 5' -57.3 NC_005178.1 + 1704 0.66 0.499421
Target:  5'- cAUCGUCAGgcucaugcggaaaCGCCuccuaguUCUUCGCCAaGCCGg -3'
miRNA:   3'- -UGGCAGUC-------------GUGGu------AGGAGCGGU-UGGC- -5'
23091 5' -57.3 NC_005178.1 + 28729 0.66 0.499421
Target:  5'- cCCGgCAcGCGCCGggcgacuUUCUUGCCGACCu -3'
miRNA:   3'- uGGCaGU-CGUGGU-------AGGAGCGGUUGGc -5'
23091 5' -57.3 NC_005178.1 + 28160 0.66 0.494178
Target:  5'- gACgGUCGGCGCCucggcuguauccgCCUCGgCCGGCg- -3'
miRNA:   3'- -UGgCAGUCGUGGua-----------GGAGC-GGUUGgc -5'
23091 5' -57.3 NC_005178.1 + 3363 0.66 0.490001
Target:  5'- cUUGUCAGCAgCggCC-CGCCAGCUc -3'
miRNA:   3'- uGGCAGUCGUgGuaGGaGCGGUUGGc -5'
23091 5' -57.3 NC_005178.1 + 1949 0.66 0.490001
Target:  5'- cACCGUC-GCcCCAgcuUCCgggccgaugUUGCCGACCGu -3'
miRNA:   3'- -UGGCAGuCGuGGU---AGG---------AGCGGUUGGC- -5'
23091 5' -57.3 NC_005178.1 + 28553 0.66 0.490001
Target:  5'- gGCCGUCcgccGCGCCAccgggggCgUCGCCGGCa- -3'
miRNA:   3'- -UGGCAGu---CGUGGUa------GgAGCGGUUGgc -5'
23091 5' -57.3 NC_005178.1 + 14054 0.66 0.487919
Target:  5'- aGCCgGUCAGUGCCuugagcaGCCGGCCGa -3'
miRNA:   3'- -UGG-CAGUCGUGGuaggag-CGGUUGGC- -5'
23091 5' -57.3 NC_005178.1 + 13274 0.66 0.479633
Target:  5'- cGCCGUaGGCGCCAUCggCUCGCaGGgCGu -3'
miRNA:   3'- -UGGCAgUCGUGGUAG--GAGCGgUUgGC- -5'
23091 5' -57.3 NC_005178.1 + 29230 0.66 0.479633
Target:  5'- --aGUCAGCACgAUCUacgaGUCGGCCGg -3'
miRNA:   3'- uggCAGUCGUGgUAGGag--CGGUUGGC- -5'
23091 5' -57.3 NC_005178.1 + 18897 0.66 0.469373
Target:  5'- cGCCGggaUAGuCACCuuacggCCUCGCcCAGCCu -3'
miRNA:   3'- -UGGCa--GUC-GUGGua----GGAGCG-GUUGGc -5'
23091 5' -57.3 NC_005178.1 + 26958 0.66 0.469373
Target:  5'- uGCUG-CGGUGCCGg-CUCGCuCGGCCGg -3'
miRNA:   3'- -UGGCaGUCGUGGUagGAGCG-GUUGGC- -5'
23091 5' -57.3 NC_005178.1 + 6443 0.67 0.459227
Target:  5'- gGCCGUCGGUGCCGa---UGCUGACCGu -3'
miRNA:   3'- -UGGCAGUCGUGGUaggaGCGGUUGGC- -5'
23091 5' -57.3 NC_005178.1 + 24180 0.67 0.459227
Target:  5'- aGCgGUCAagACCAUCCU--CCAGCCGg -3'
miRNA:   3'- -UGgCAGUcgUGGUAGGAgcGGUUGGC- -5'
23091 5' -57.3 NC_005178.1 + 449 0.67 0.448203
Target:  5'- gUCGUCGGgauggaaCGCCAgg-UCGCCGACCGg -3'
miRNA:   3'- uGGCAGUC-------GUGGUaggAGCGGUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.