Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23092 | 3' | -57.1 | NC_005178.1 | + | 6397 | 0.66 | 0.483729 |
Target: 5'- -cUGCGCUcgauugucGC-GGcGAGGCGcGCCGCGa -3' miRNA: 3'- cuACGCGA--------CGaCC-UUUCGCaCGGCGC- -5' |
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23092 | 3' | -57.1 | NC_005178.1 | + | 9938 | 0.66 | 0.483729 |
Target: 5'- --aGCGCauccuguuguUGCUGGAgcGCGUcGCUGUa -3' miRNA: 3'- cuaCGCG----------ACGACCUuuCGCA-CGGCGc -5' |
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23092 | 3' | -57.1 | NC_005178.1 | + | 29343 | 0.66 | 0.47328 |
Target: 5'- --aGCGacacGUUGucguAAGCGUGCCGCGa -3' miRNA: 3'- cuaCGCga--CGACcu--UUCGCACGGCGC- -5' |
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23092 | 3' | -57.1 | NC_005178.1 | + | 26597 | 0.66 | 0.462946 |
Target: 5'- cGGUGaCGCgggggGCaGG-AGGCGgGCCGCGc -3' miRNA: 3'- -CUAC-GCGa----CGaCCuUUCGCaCGGCGC- -5' |
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23092 | 3' | -57.1 | NC_005178.1 | + | 28296 | 0.67 | 0.432677 |
Target: 5'- --gGCGCUGCgGGAGcuGCcgggGCCGCu -3' miRNA: 3'- cuaCGCGACGaCCUUu-CGca--CGGCGc -5' |
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23092 | 3' | -57.1 | NC_005178.1 | + | 31032 | 0.67 | 0.422847 |
Target: 5'- aGAUGCagacggcauuacGCUGuCUGGccAGGCGUcGCCGCc -3' miRNA: 3'- -CUACG------------CGAC-GACCu-UUCGCA-CGGCGc -5' |
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23092 | 3' | -57.1 | NC_005178.1 | + | 32613 | 0.67 | 0.417013 |
Target: 5'- --cGCGCUGCUGuAcaagacccggucgccGAGCGgUGCCGuCGa -3' miRNA: 3'- cuaCGCGACGACcU---------------UUCGC-ACGGC-GC- -5' |
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23092 | 3' | -57.1 | NC_005178.1 | + | 9585 | 0.67 | 0.403595 |
Target: 5'- --cGCGCUGCgcu-GGGCGgucGCCGCu -3' miRNA: 3'- cuaCGCGACGaccuUUCGCa--CGGCGc -5' |
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23092 | 3' | -57.1 | NC_005178.1 | + | 10752 | 0.67 | 0.394179 |
Target: 5'- --aGCGCgucccgGCUGGAAGGCcUGCCc-- -3' miRNA: 3'- cuaCGCGa-----CGACCUUUCGcACGGcgc -5' |
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23092 | 3' | -57.1 | NC_005178.1 | + | 5989 | 0.68 | 0.375779 |
Target: 5'- cGggGCGCUGCcccaGGcuGGCGUGUCGg- -3' miRNA: 3'- -CuaCGCGACGa---CCuuUCGCACGGCgc -5' |
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23092 | 3' | -57.1 | NC_005178.1 | + | 13029 | 0.68 | 0.3668 |
Target: 5'- aGGUGCaGCUGCUGGccAGCcugGCCGa- -3' miRNA: 3'- -CUACG-CGACGACCuuUCGca-CGGCgc -5' |
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23092 | 3' | -57.1 | NC_005178.1 | + | 29158 | 0.68 | 0.3668 |
Target: 5'- --gGCGCUGCUGuGGAaucAGCccaUGCCGUa -3' miRNA: 3'- cuaCGCGACGAC-CUU---UCGc--ACGGCGc -5' |
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23092 | 3' | -57.1 | NC_005178.1 | + | 21199 | 0.71 | 0.21293 |
Target: 5'- cGAcuCGCUggucugGCUGGuGAGCGUGCCGCc -3' miRNA: 3'- -CUacGCGA------CGACCuUUCGCACGGCGc -5' |
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23092 | 3' | -57.1 | NC_005178.1 | + | 9337 | 0.72 | 0.196132 |
Target: 5'- gGcgGCGCcGCUcaGGAGCGUGCCGCc -3' miRNA: 3'- -CuaCGCGaCGAccUUUCGCACGGCGc -5' |
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23092 | 3' | -57.1 | NC_005178.1 | + | 7154 | 1.08 | 0.000397 |
Target: 5'- cGAUGCGCUGCUGGAAAGCGUGCCGCGc -3' miRNA: 3'- -CUACGCGACGACCUUUCGCACGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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