miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23092 3' -57.1 NC_005178.1 + 9938 0.66 0.483729
Target:  5'- --aGCGCauccuguuguUGCUGGAgcGCGUcGCUGUa -3'
miRNA:   3'- cuaCGCG----------ACGACCUuuCGCA-CGGCGc -5'
23092 3' -57.1 NC_005178.1 + 6397 0.66 0.483729
Target:  5'- -cUGCGCUcgauugucGC-GGcGAGGCGcGCCGCGa -3'
miRNA:   3'- cuACGCGA--------CGaCC-UUUCGCaCGGCGC- -5'
23092 3' -57.1 NC_005178.1 + 29343 0.66 0.47328
Target:  5'- --aGCGacacGUUGucguAAGCGUGCCGCGa -3'
miRNA:   3'- cuaCGCga--CGACcu--UUCGCACGGCGC- -5'
23092 3' -57.1 NC_005178.1 + 26597 0.66 0.462946
Target:  5'- cGGUGaCGCgggggGCaGG-AGGCGgGCCGCGc -3'
miRNA:   3'- -CUAC-GCGa----CGaCCuUUCGCaCGGCGC- -5'
23092 3' -57.1 NC_005178.1 + 28296 0.67 0.432677
Target:  5'- --gGCGCUGCgGGAGcuGCcgggGCCGCu -3'
miRNA:   3'- cuaCGCGACGaCCUUu-CGca--CGGCGc -5'
23092 3' -57.1 NC_005178.1 + 31032 0.67 0.422847
Target:  5'- aGAUGCagacggcauuacGCUGuCUGGccAGGCGUcGCCGCc -3'
miRNA:   3'- -CUACG------------CGAC-GACCu-UUCGCA-CGGCGc -5'
23092 3' -57.1 NC_005178.1 + 32613 0.67 0.417013
Target:  5'- --cGCGCUGCUGuAcaagacccggucgccGAGCGgUGCCGuCGa -3'
miRNA:   3'- cuaCGCGACGACcU---------------UUCGC-ACGGC-GC- -5'
23092 3' -57.1 NC_005178.1 + 9585 0.67 0.403595
Target:  5'- --cGCGCUGCgcu-GGGCGgucGCCGCu -3'
miRNA:   3'- cuaCGCGACGaccuUUCGCa--CGGCGc -5'
23092 3' -57.1 NC_005178.1 + 10752 0.67 0.394179
Target:  5'- --aGCGCgucccgGCUGGAAGGCcUGCCc-- -3'
miRNA:   3'- cuaCGCGa-----CGACCUUUCGcACGGcgc -5'
23092 3' -57.1 NC_005178.1 + 5989 0.68 0.375779
Target:  5'- cGggGCGCUGCcccaGGcuGGCGUGUCGg- -3'
miRNA:   3'- -CuaCGCGACGa---CCuuUCGCACGGCgc -5'
23092 3' -57.1 NC_005178.1 + 13029 0.68 0.3668
Target:  5'- aGGUGCaGCUGCUGGccAGCcugGCCGa- -3'
miRNA:   3'- -CUACG-CGACGACCuuUCGca-CGGCgc -5'
23092 3' -57.1 NC_005178.1 + 29158 0.68 0.3668
Target:  5'- --gGCGCUGCUGuGGAaucAGCccaUGCCGUa -3'
miRNA:   3'- cuaCGCGACGAC-CUU---UCGc--ACGGCGc -5'
23092 3' -57.1 NC_005178.1 + 21199 0.71 0.21293
Target:  5'- cGAcuCGCUggucugGCUGGuGAGCGUGCCGCc -3'
miRNA:   3'- -CUacGCGA------CGACCuUUCGCACGGCGc -5'
23092 3' -57.1 NC_005178.1 + 9337 0.72 0.196132
Target:  5'- gGcgGCGCcGCUcaGGAGCGUGCCGCc -3'
miRNA:   3'- -CuaCGCGaCGAccUUUCGCACGGCGc -5'
23092 3' -57.1 NC_005178.1 + 7154 1.08 0.000397
Target:  5'- cGAUGCGCUGCUGGAAAGCGUGCCGCGc -3'
miRNA:   3'- -CUACGCGACGACCUUUCGCACGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.