miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23092 5' -55 NC_005178.1 + 1193 0.66 0.660877
Target:  5'- cCCCGCGUagagcgugcacucGCCGCcgcgcuggaccugagCCCUGUGAAGCu-- -3'
miRNA:   3'- -GGGCGUA-------------UGGCG---------------GGGGUACUUUGcuc -5'
23092 5' -55 NC_005178.1 + 11271 0.66 0.646289
Target:  5'- aCCUGCAcuccaACCGCCCCgAgcUGuu-CGAGu -3'
miRNA:   3'- -GGGCGUa----UGGCGGGGgU--ACuuuGCUC- -5'
23092 5' -55 NC_005178.1 + 4468 0.66 0.646289
Target:  5'- cCCUGCcgACCGCUCCCGcccAGCGc- -3'
miRNA:   3'- -GGGCGuaUGGCGGGGGUacuUUGCuc -5'
23092 5' -55 NC_005178.1 + 4547 0.66 0.63505
Target:  5'- gCCGgAcGCCGCCCa-GUGGuuCGAGg -3'
miRNA:   3'- gGGCgUaUGGCGGGggUACUuuGCUC- -5'
23092 5' -55 NC_005178.1 + 19926 0.66 0.63505
Target:  5'- gCCGCcaGUGCCGCCgCaGUGAu-CGAGc -3'
miRNA:   3'- gGGCG--UAUGGCGGgGgUACUuuGCUC- -5'
23092 5' -55 NC_005178.1 + 1543 0.67 0.59017
Target:  5'- gCCCGCAUGUCGCgCCUGUccGGCGAu -3'
miRNA:   3'- -GGGCGUAUGGCGgGGGUAcuUUGCUc -5'
23092 5' -55 NC_005178.1 + 2510 0.67 0.579018
Target:  5'- -aCGCccugAUCGCCCgCCAUGAGACuacugGAGg -3'
miRNA:   3'- ggGCGua--UGGCGGG-GGUACUUUG-----CUC- -5'
23092 5' -55 NC_005178.1 + 17854 0.68 0.534953
Target:  5'- -gCGCcUGCCGCCCUCG----GCGAGg -3'
miRNA:   3'- ggGCGuAUGGCGGGGGUacuuUGCUC- -5'
23092 5' -55 NC_005178.1 + 14185 0.68 0.513357
Target:  5'- gCCCGacUGCCGCCCUgGUGcGACGc- -3'
miRNA:   3'- -GGGCguAUGGCGGGGgUACuUUGCuc -5'
23092 5' -55 NC_005178.1 + 14659 0.69 0.481664
Target:  5'- aCCaggaGCGcGCCGCCgCCAUGGagGACGGc -3'
miRNA:   3'- -GGg---CGUaUGGCGGgGGUACU--UUGCUc -5'
23092 5' -55 NC_005178.1 + 31811 0.69 0.481664
Target:  5'- gCCCGag-GCCGCCaCCgAUGcgGCGAu -3'
miRNA:   3'- -GGGCguaUGGCGG-GGgUACuuUGCUc -5'
23092 5' -55 NC_005178.1 + 16959 0.69 0.45095
Target:  5'- gCCGUccACuCGCCgCCGUuGAGGCGAGa -3'
miRNA:   3'- gGGCGuaUG-GCGGgGGUA-CUUUGCUC- -5'
23092 5' -55 NC_005178.1 + 8053 0.7 0.431082
Target:  5'- gCCCGCAUaucgGCCGCagCCCAgcGGGAgGAGc -3'
miRNA:   3'- -GGGCGUA----UGGCGg-GGGUa-CUUUgCUC- -5'
23092 5' -55 NC_005178.1 + 7193 1.12 0.000485
Target:  5'- aCCCGCAUACCGCCCCCAUGAAACGAGa -3'
miRNA:   3'- -GGGCGUAUGGCGGGGGUACUUUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.