Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23092 | 5' | -55 | NC_005178.1 | + | 31811 | 0.69 | 0.481664 |
Target: 5'- gCCCGag-GCCGCCaCCgAUGcgGCGAu -3' miRNA: 3'- -GGGCguaUGGCGG-GGgUACuuUGCUc -5' |
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23092 | 5' | -55 | NC_005178.1 | + | 19926 | 0.66 | 0.63505 |
Target: 5'- gCCGCcaGUGCCGCCgCaGUGAu-CGAGc -3' miRNA: 3'- gGGCG--UAUGGCGGgGgUACUuuGCUC- -5' |
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23092 | 5' | -55 | NC_005178.1 | + | 17854 | 0.68 | 0.534953 |
Target: 5'- -gCGCcUGCCGCCCUCG----GCGAGg -3' miRNA: 3'- ggGCGuAUGGCGGGGGUacuuUGCUC- -5' |
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23092 | 5' | -55 | NC_005178.1 | + | 16959 | 0.69 | 0.45095 |
Target: 5'- gCCGUccACuCGCCgCCGUuGAGGCGAGa -3' miRNA: 3'- gGGCGuaUG-GCGGgGGUA-CUUUGCUC- -5' |
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23092 | 5' | -55 | NC_005178.1 | + | 14659 | 0.69 | 0.481664 |
Target: 5'- aCCaggaGCGcGCCGCCgCCAUGGagGACGGc -3' miRNA: 3'- -GGg---CGUaUGGCGGgGGUACU--UUGCUc -5' |
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23092 | 5' | -55 | NC_005178.1 | + | 14185 | 0.68 | 0.513357 |
Target: 5'- gCCCGacUGCCGCCCUgGUGcGACGc- -3' miRNA: 3'- -GGGCguAUGGCGGGGgUACuUUGCuc -5' |
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23092 | 5' | -55 | NC_005178.1 | + | 11271 | 0.66 | 0.646289 |
Target: 5'- aCCUGCAcuccaACCGCCCCgAgcUGuu-CGAGu -3' miRNA: 3'- -GGGCGUa----UGGCGGGGgU--ACuuuGCUC- -5' |
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23092 | 5' | -55 | NC_005178.1 | + | 8053 | 0.7 | 0.431082 |
Target: 5'- gCCCGCAUaucgGCCGCagCCCAgcGGGAgGAGc -3' miRNA: 3'- -GGGCGUA----UGGCGg-GGGUa-CUUUgCUC- -5' |
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23092 | 5' | -55 | NC_005178.1 | + | 7193 | 1.12 | 0.000485 |
Target: 5'- aCCCGCAUACCGCCCCCAUGAAACGAGa -3' miRNA: 3'- -GGGCGUAUGGCGGGGGUACUUUGCUC- -5' |
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23092 | 5' | -55 | NC_005178.1 | + | 4547 | 0.66 | 0.63505 |
Target: 5'- gCCGgAcGCCGCCCa-GUGGuuCGAGg -3' miRNA: 3'- gGGCgUaUGGCGGGggUACUuuGCUC- -5' |
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23092 | 5' | -55 | NC_005178.1 | + | 4468 | 0.66 | 0.646289 |
Target: 5'- cCCUGCcgACCGCUCCCGcccAGCGc- -3' miRNA: 3'- -GGGCGuaUGGCGGGGGUacuUUGCuc -5' |
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23092 | 5' | -55 | NC_005178.1 | + | 2510 | 0.67 | 0.579018 |
Target: 5'- -aCGCccugAUCGCCCgCCAUGAGACuacugGAGg -3' miRNA: 3'- ggGCGua--UGGCGGG-GGUACUUUG-----CUC- -5' |
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23092 | 5' | -55 | NC_005178.1 | + | 1543 | 0.67 | 0.59017 |
Target: 5'- gCCCGCAUGUCGCgCCUGUccGGCGAu -3' miRNA: 3'- -GGGCGUAUGGCGgGGGUAcuUUGCUc -5' |
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23092 | 5' | -55 | NC_005178.1 | + | 1193 | 0.66 | 0.660877 |
Target: 5'- cCCCGCGUagagcgugcacucGCCGCcgcgcuggaccugagCCCUGUGAAGCu-- -3' miRNA: 3'- -GGGCGUA-------------UGGCG---------------GGGGUACUUUGcuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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