miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23093 3' -54.8 NC_005178.1 + 15958 0.69 0.460147
Target:  5'- cGCCUGGGGCGGuagauGCCGAUuUGGUcguCCu -3'
miRNA:   3'- cCGGACCUCGCU-----UGGCUA-GUCGau-GG- -5'
23093 3' -54.8 NC_005178.1 + 31940 0.69 0.460147
Target:  5'- cGGCaUGGGcCGAGCCGAgcggUCGGCguuCCg -3'
miRNA:   3'- -CCGgACCUcGCUUGGCU----AGUCGau-GG- -5'
23093 3' -54.8 NC_005178.1 + 12086 0.69 0.457088
Target:  5'- cGCCUGGuggaguggucgcguGGCGGgccugGCCGAUgGGCgcGCCg -3'
miRNA:   3'- cCGGACC--------------UCGCU-----UGGCUAgUCGa-UGG- -5'
23093 3' -54.8 NC_005178.1 + 26072 0.69 0.460147
Target:  5'- cGGCCUGGA-CGAcaucgcCCGAggggCGgacGCUGCCg -3'
miRNA:   3'- -CCGGACCUcGCUu-----GGCUa---GU---CGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 9693 0.69 0.439966
Target:  5'- cGGCCUGGAggucgGCGuAGuuGcguugCAGCUGCUg -3'
miRNA:   3'- -CCGGACCU-----CGC-UUggCua---GUCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 20230 0.7 0.430066
Target:  5'- cGGUCUGGAGCcucucgcacGCCGAgCGGCcgcgACCu -3'
miRNA:   3'- -CCGGACCUCGcu-------UGGCUaGUCGa---UGG- -5'
23093 3' -54.8 NC_005178.1 + 28990 0.7 0.401173
Target:  5'- uGGCCUGG-GCGGcACCGAUagCAuCUACa -3'
miRNA:   3'- -CCGGACCuCGCU-UGGCUA--GUcGAUGg -5'
23093 3' -54.8 NC_005178.1 + 10592 0.7 0.38261
Target:  5'- cGGCC--GAGCGAGCCGGcaccgCAGCaauCCa -3'
miRNA:   3'- -CCGGacCUCGCUUGGCUa----GUCGau-GG- -5'
23093 3' -54.8 NC_005178.1 + 36041 0.7 0.39182
Target:  5'- gGGCC-GGGGCGAACCaGAaCcGCUugGCCc -3'
miRNA:   3'- -CCGGaCCUCGCUUGG-CUaGuCGA--UGG- -5'
23093 3' -54.8 NC_005178.1 + 10458 0.7 0.430066
Target:  5'- cGCCUGGAucGCGGcaaugcuCCGGUCcAGCUcCCu -3'
miRNA:   3'- cCGGACCU--CGCUu------GGCUAG-UCGAuGG- -5'
23093 3' -54.8 NC_005178.1 + 26148 0.7 0.420299
Target:  5'- aGGCgCaGGGcCGcACCGAUCAGCcACCa -3'
miRNA:   3'- -CCG-GaCCUcGCuUGGCUAGUCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 2196 0.7 0.39182
Target:  5'- gGGCCUGGAGCGucacGCCc--UGGCUguagACCg -3'
miRNA:   3'- -CCGGACCUCGCu---UGGcuaGUCGA----UGG- -5'
23093 3' -54.8 NC_005178.1 + 1938 0.7 0.410667
Target:  5'- -aCCUGGAGCGucACCGucgcccCAGCUuCCg -3'
miRNA:   3'- ccGGACCUCGCu-UGGCua----GUCGAuGG- -5'
23093 3' -54.8 NC_005178.1 + 25678 0.71 0.373546
Target:  5'- cGGCCUGG-GCGAuCUGcUCGGC-GCUg -3'
miRNA:   3'- -CCGGACCuCGCUuGGCuAGUCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 14021 0.71 0.338769
Target:  5'- gGGCCagcGGAGUGAcgccCUGAUCAGgaACCc -3'
miRNA:   3'- -CCGGa--CCUCGCUu---GGCUAGUCgaUGG- -5'
23093 3' -54.8 NC_005178.1 + 3010 0.71 0.338769
Target:  5'- aGCCUGGAGCGcuuccuggaccaGGCCGAgcgUGGC-GCCc -3'
miRNA:   3'- cCGGACCUCGC------------UUGGCUa--GUCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 33908 0.71 0.347238
Target:  5'- cGCCUGGcGGCGAugC--UCGGCgGCCg -3'
miRNA:   3'- cCGGACC-UCGCUugGcuAGUCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 5949 0.72 0.298691
Target:  5'- uGGCCUGGAcgggGCGGACCaGGUCcaGGCcggcggcgguacUGCCu -3'
miRNA:   3'- -CCGGACCU----CGCUUGG-CUAG--UCG------------AUGG- -5'
23093 3' -54.8 NC_005178.1 + 11987 0.72 0.306404
Target:  5'- -cCCUGGuGCGGGCUGGUaccgGGCUGCUg -3'
miRNA:   3'- ccGGACCuCGCUUGGCUAg---UCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 9830 0.72 0.306404
Target:  5'- aGGCgCUGcugcGCGAAUCGGUCgucaaGGCUGCCa -3'
miRNA:   3'- -CCG-GACcu--CGCUUGGCUAG-----UCGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.