miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23093 3' -54.8 NC_005178.1 + 14064 0.67 0.589727
Target:  5'- uGCCUuGAGCagccGGCCGAgCAGCggGCCg -3'
miRNA:   3'- cCGGAcCUCGc---UUGGCUaGUCGa-UGG- -5'
23093 3' -54.8 NC_005178.1 + 14021 0.71 0.338769
Target:  5'- gGGCCagcGGAGUGAcgccCUGAUCAGgaACCc -3'
miRNA:   3'- -CCGGa--CCUCGCUu---GGCUAGUCgaUGG- -5'
23093 3' -54.8 NC_005178.1 + 13072 0.76 0.174738
Target:  5'- -uCCUGGAGCGggUCGGUC-GCgACCu -3'
miRNA:   3'- ccGGACCUCGCuuGGCUAGuCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 12807 0.66 0.668604
Target:  5'- gGGCCgcgugGuGGGUGAGCUgcucuucgaaGGUCAGCUcgcggacaACCa -3'
miRNA:   3'- -CCGGa----C-CUCGCUUGG----------CUAGUCGA--------UGG- -5'
23093 3' -54.8 NC_005178.1 + 12596 0.75 0.205607
Target:  5'- cGCCUGGAGCGcuucgagGACCGAUUcccgcagaucgAGCguaagGCCg -3'
miRNA:   3'- cCGGACCUCGC-------UUGGCUAG-----------UCGa----UGG- -5'
23093 3' -54.8 NC_005178.1 + 12231 0.81 0.078107
Target:  5'- cGCCUGGccaAGCGGGCCGA-CAGCgACCa -3'
miRNA:   3'- cCGGACC---UCGCUUGGCUaGUCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 12086 0.69 0.457088
Target:  5'- cGCCUGGuggaguggucgcguGGCGGgccugGCCGAUgGGCgcGCCg -3'
miRNA:   3'- cCGGACC--------------UCGCU-----UGGCUAgUCGa-UGG- -5'
23093 3' -54.8 NC_005178.1 + 11987 0.72 0.306404
Target:  5'- -cCCUGGuGCGGGCUGGUaccgGGCUGCUg -3'
miRNA:   3'- ccGGACCuCGCUUGGCUAg---UCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 10592 0.7 0.38261
Target:  5'- cGGCC--GAGCGAGCCGGcaccgCAGCaauCCa -3'
miRNA:   3'- -CCGGacCUCGCUUGGCUa----GUCGau-GG- -5'
23093 3' -54.8 NC_005178.1 + 10458 0.7 0.430066
Target:  5'- cGCCUGGAucGCGGcaaugcuCCGGUCcAGCUcCCu -3'
miRNA:   3'- cCGGACCU--CGCUu------GGCUAG-UCGAuGG- -5'
23093 3' -54.8 NC_005178.1 + 10365 0.66 0.646082
Target:  5'- uGGCCgagcuggugGGcAGCGAcAUCGAggagCAGCU-CCa -3'
miRNA:   3'- -CCGGa--------CC-UCGCU-UGGCUa---GUCGAuGG- -5'
23093 3' -54.8 NC_005178.1 + 10327 0.67 0.556282
Target:  5'- gGGCCgggcgcggaGGGGCGAAgCGcgCcgGGCUGCg -3'
miRNA:   3'- -CCGGa--------CCUCGCUUgGCuaG--UCGAUGg -5'
23093 3' -54.8 NC_005178.1 + 10263 0.68 0.50191
Target:  5'- cGCCUGGAGCuu-CUGcUCGGCguuCCu -3'
miRNA:   3'- cCGGACCUCGcuuGGCuAGUCGau-GG- -5'
23093 3' -54.8 NC_005178.1 + 9830 0.72 0.306404
Target:  5'- aGGCgCUGcugcGCGAAUCGGUCgucaaGGCUGCCa -3'
miRNA:   3'- -CCG-GACcu--CGCUUGGCUAG-----UCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 9693 0.69 0.439966
Target:  5'- cGGCCUGGAggucgGCGuAGuuGcguugCAGCUGCUg -3'
miRNA:   3'- -CCGGACCU-----CGC-UUggCua---GUCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 9324 0.73 0.28372
Target:  5'- cGGCCUGGAuaGCGGcggcGCCGcUCAGgaGCg -3'
miRNA:   3'- -CCGGACCU--CGCU----UGGCuAGUCgaUGg -5'
23093 3' -54.8 NC_005178.1 + 7903 0.67 0.556282
Target:  5'- cGGuCCUGGAGCu-ACUGcgCAGCaagggGCUa -3'
miRNA:   3'- -CC-GGACCUCGcuUGGCuaGUCGa----UGG- -5'
23093 3' -54.8 NC_005178.1 + 7482 1.15 0.000287
Target:  5'- uGGCCUGGAGCGAACCGAUCAGCUACCg -3'
miRNA:   3'- -CCGGACCUCGCUUGGCUAGUCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 7340 0.68 0.491307
Target:  5'- cGCCUGGAGCcGACaGAggGGCgcgugACCa -3'
miRNA:   3'- cCGGACCUCGcUUGgCUagUCGa----UGG- -5'
23093 3' -54.8 NC_005178.1 + 6879 0.79 0.117144
Target:  5'- cGGCCUGGGGCGAGCguccgcccgucuuCGucCAGCUGCUc -3'
miRNA:   3'- -CCGGACCUCGCUUG-------------GCuaGUCGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.