miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23093 3' -54.8 NC_005178.1 + 1837 0.68 0.53429
Target:  5'- cGuCCUGGAGCGGACC-AUCcGCcauguccucgGCCa -3'
miRNA:   3'- cC-GGACCUCGCUUGGcUAGuCGa---------UGG- -5'
23093 3' -54.8 NC_005178.1 + 20734 0.68 0.544151
Target:  5'- cGGCCUGGuuuuGCauguccuGGGCCGGcaGGCUgGCCa -3'
miRNA:   3'- -CCGGACCu---CG-------CUUGGCUagUCGA-UGG- -5'
23093 3' -54.8 NC_005178.1 + 23361 0.68 0.54525
Target:  5'- uGGCCaGGcGCGGAUUGAacucCAGCUccGCCu -3'
miRNA:   3'- -CCGGaCCuCGCUUGGCUa---GUCGA--UGG- -5'
23093 3' -54.8 NC_005178.1 + 32738 0.67 0.567378
Target:  5'- uGGCCUGGAcguaguaggcGCGGcGgCGAUUGGCgauCCa -3'
miRNA:   3'- -CCGGACCU----------CGCU-UgGCUAGUCGau-GG- -5'
23093 3' -54.8 NC_005178.1 + 14064 0.67 0.589727
Target:  5'- uGCCUuGAGCagccGGCCGAgCAGCggGCCg -3'
miRNA:   3'- cCGGAcCUCGc---UUGGCUaGUCGa-UGG- -5'
23093 3' -54.8 NC_005178.1 + 21977 0.67 0.600962
Target:  5'- cGGCCUcgaucaGGAuGUGAGCCagcuuggcuggGGUCAGCcccuugGCCg -3'
miRNA:   3'- -CCGGA------CCU-CGCUUGG-----------CUAGUCGa-----UGG- -5'
23093 3' -54.8 NC_005178.1 + 5876 0.66 0.612225
Target:  5'- aGCCgGGucAGCGuaggcuguUCGGUCAGCUGCg -3'
miRNA:   3'- cCGGaCC--UCGCuu------GGCUAGUCGAUGg -5'
23093 3' -54.8 NC_005178.1 + 9693 0.69 0.439966
Target:  5'- cGGCCUGGAggucgGCGuAGuuGcguugCAGCUGCUg -3'
miRNA:   3'- -CCGGACCU-----CGC-UUggCua---GUCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 10458 0.7 0.430066
Target:  5'- cGCCUGGAucGCGGcaaugcuCCGGUCcAGCUcCCu -3'
miRNA:   3'- cCGGACCU--CGCUu------GGCUAG-UCGAuGG- -5'
23093 3' -54.8 NC_005178.1 + 4974 0.74 0.242374
Target:  5'- cGGCCggugcGGugauGCGAACUGGUCGGaCUGCg -3'
miRNA:   3'- -CCGGa----CCu---CGCUUGGCUAGUC-GAUGg -5'
23093 3' -54.8 NC_005178.1 + 829 0.73 0.27646
Target:  5'- cGGCaugaaaUGGAGCGAuCCGGuuUCAGCgcgcACCc -3'
miRNA:   3'- -CCGg-----ACCUCGCUuGGCU--AGUCGa---UGG- -5'
23093 3' -54.8 NC_005178.1 + 33038 0.73 0.282987
Target:  5'- aGGCC-GGAGCGuuGCCGcUCGGCcagcucgcaccacUGCCg -3'
miRNA:   3'- -CCGGaCCUCGCu-UGGCuAGUCG-------------AUGG- -5'
23093 3' -54.8 NC_005178.1 + 9324 0.73 0.28372
Target:  5'- cGGCCUGGAuaGCGGcggcGCCGcUCAGgaGCg -3'
miRNA:   3'- -CCGGACCU--CGCU----UGGCuAGUCgaUGg -5'
23093 3' -54.8 NC_005178.1 + 5949 0.72 0.298691
Target:  5'- uGGCCUGGAcgggGCGGACCaGGUCcaGGCcggcggcgguacUGCCu -3'
miRNA:   3'- -CCGGACCU----CGCUUGG-CUAG--UCG------------AUGG- -5'
23093 3' -54.8 NC_005178.1 + 9830 0.72 0.306404
Target:  5'- aGGCgCUGcugcGCGAAUCGGUCgucaaGGCUGCCa -3'
miRNA:   3'- -CCG-GACcu--CGCUUGGCUAG-----UCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 14021 0.71 0.338769
Target:  5'- gGGCCagcGGAGUGAcgccCUGAUCAGgaACCc -3'
miRNA:   3'- -CCGGa--CCUCGCUu---GGCUAGUCgaUGG- -5'
23093 3' -54.8 NC_005178.1 + 25678 0.71 0.373546
Target:  5'- cGGCCUGG-GCGAuCUGcUCGGC-GCUg -3'
miRNA:   3'- -CCGGACCuCGCUuGGCuAGUCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 2196 0.7 0.39182
Target:  5'- gGGCCUGGAGCGucacGCCc--UGGCUguagACCg -3'
miRNA:   3'- -CCGGACCUCGCu---UGGcuaGUCGA----UGG- -5'
23093 3' -54.8 NC_005178.1 + 1938 0.7 0.410667
Target:  5'- -aCCUGGAGCGucACCGucgcccCAGCUuCCg -3'
miRNA:   3'- ccGGACCUCGCu-UGGCua----GUCGAuGG- -5'
23093 3' -54.8 NC_005178.1 + 26148 0.7 0.420299
Target:  5'- aGGCgCaGGGcCGcACCGAUCAGCcACCa -3'
miRNA:   3'- -CCG-GaCCUcGCuUGGCUAGUCGaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.