miRNA display CGI


Results 61 - 71 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23093 3' -54.8 NC_005178.1 + 14021 0.71 0.338769
Target:  5'- gGGCCagcGGAGUGAcgccCUGAUCAGgaACCc -3'
miRNA:   3'- -CCGGa--CCUCGCUu---GGCUAGUCgaUGG- -5'
23093 3' -54.8 NC_005178.1 + 25678 0.71 0.373546
Target:  5'- cGGCCUGG-GCGAuCUGcUCGGC-GCUg -3'
miRNA:   3'- -CCGGACCuCGCUuGGCuAGUCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 2196 0.7 0.39182
Target:  5'- gGGCCUGGAGCGucacGCCc--UGGCUguagACCg -3'
miRNA:   3'- -CCGGACCUCGCu---UGGcuaGUCGA----UGG- -5'
23093 3' -54.8 NC_005178.1 + 1938 0.7 0.410667
Target:  5'- -aCCUGGAGCGucACCGucgcccCAGCUuCCg -3'
miRNA:   3'- ccGGACCUCGCu-UGGCua----GUCGAuGG- -5'
23093 3' -54.8 NC_005178.1 + 26148 0.7 0.420299
Target:  5'- aGGCgCaGGGcCGcACCGAUCAGCcACCa -3'
miRNA:   3'- -CCG-GaCCUcGCuUGGCUAGUCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 10458 0.7 0.430066
Target:  5'- cGCCUGGAucGCGGcaaugcuCCGGUCcAGCUcCCu -3'
miRNA:   3'- cCGGACCU--CGCUu------GGCUAG-UCGAuGG- -5'
23093 3' -54.8 NC_005178.1 + 9693 0.69 0.439966
Target:  5'- cGGCCUGGAggucgGCGuAGuuGcguugCAGCUGCUg -3'
miRNA:   3'- -CCGGACCU-----CGC-UUggCua---GUCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 15958 0.69 0.460147
Target:  5'- cGCCUGGGGCGGuagauGCCGAUuUGGUcguCCu -3'
miRNA:   3'- cCGGACCUCGCU-----UGGCUA-GUCGau-GG- -5'
23093 3' -54.8 NC_005178.1 + 25194 0.68 0.50191
Target:  5'- uGGCCUGG-GCGGcacguugacgGgCGGUUucgAGCUGCUg -3'
miRNA:   3'- -CCGGACCuCGCU----------UgGCUAG---UCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 10263 0.68 0.50191
Target:  5'- cGCCUGGAGCuu-CUGcUCGGCguuCCu -3'
miRNA:   3'- cCGGACCUCGcuuGGCuAGUCGau-GG- -5'
23093 3' -54.8 NC_005178.1 + 13072 0.76 0.174738
Target:  5'- -uCCUGGAGCGggUCGGUC-GCgACCu -3'
miRNA:   3'- ccGGACCUCGCuuGGCUAGuCGaUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.