miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23093 3' -54.8 NC_005178.1 + 31652 0.66 0.634795
Target:  5'- -aCCcGGuGCGcACCGcgCAGCUgACCg -3'
miRNA:   3'- ccGGaCCuCGCuUGGCuaGUCGA-UGG- -5'
23093 3' -54.8 NC_005178.1 + 11987 0.72 0.306404
Target:  5'- -cCCUGGuGCGGGCUGGUaccgGGCUGCUg -3'
miRNA:   3'- ccGGACCuCGCUUGGCUAg---UCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 15699 0.73 0.27646
Target:  5'- cGGCCUGGAcUGGACC-AUCgAGCcGCCg -3'
miRNA:   3'- -CCGGACCUcGCUUGGcUAG-UCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 28121 0.74 0.235992
Target:  5'- uGGCCUGG-GCGGuggcACCGAUggCGGCgcCCa -3'
miRNA:   3'- -CCGGACCuCGCU----UGGCUA--GUCGauGG- -5'
23093 3' -54.8 NC_005178.1 + 6879 0.79 0.117144
Target:  5'- cGGCCUGGGGCGAGCguccgcccgucuuCGucCAGCUGCUc -3'
miRNA:   3'- -CCGGACCUCGCUUG-------------GCuaGUCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 20230 0.7 0.430066
Target:  5'- cGGUCUGGAGCcucucgcacGCCGAgCGGCcgcgACCu -3'
miRNA:   3'- -CCGGACCUCGcu-------UGGCUaGUCGa---UGG- -5'
23093 3' -54.8 NC_005178.1 + 12086 0.69 0.457088
Target:  5'- cGCCUGGuggaguggucgcguGGCGGgccugGCCGAUgGGCgcGCCg -3'
miRNA:   3'- cCGGACC--------------UCGCU-----UGGCUAgUCGa-UGG- -5'
23093 3' -54.8 NC_005178.1 + 26072 0.69 0.460147
Target:  5'- cGGCCUGGA-CGAcaucgcCCGAggggCGgacGCUGCCg -3'
miRNA:   3'- -CCGGACCUcGCUu-----GGCUa---GU---CGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 17726 0.66 0.623506
Target:  5'- -cCCUGGAGaCGAccgaccggGCCGGUCGGaagauCCa -3'
miRNA:   3'- ccGGACCUC-GCU--------UGGCUAGUCgau--GG- -5'
23093 3' -54.8 NC_005178.1 + 17292 0.66 0.613352
Target:  5'- aGGCUggugGGGGCGucagauagugguugcGCCGGaCGGCgggGCCg -3'
miRNA:   3'- -CCGGa---CCUCGCu--------------UGGCUaGUCGa--UGG- -5'
23093 3' -54.8 NC_005178.1 + 29963 0.67 0.589727
Target:  5'- cGGCCUGGcGUGGAaCGcgCAGCccgGCa -3'
miRNA:   3'- -CCGGACCuCGCUUgGCuaGUCGa--UGg -5'
23093 3' -54.8 NC_005178.1 + 27989 0.67 0.578529
Target:  5'- cGGUCUGGAG-GAugCcGUC-GUUACCu -3'
miRNA:   3'- -CCGGACCUCgCUugGcUAGuCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 25368 0.67 0.567378
Target:  5'- uGGCCgGGAGCuguCCGGUuugggggagaCAGCcgACCa -3'
miRNA:   3'- -CCGGaCCUCGcuuGGCUA----------GUCGa-UGG- -5'
23093 3' -54.8 NC_005178.1 + 10327 0.67 0.556282
Target:  5'- gGGCCgggcgcggaGGGGCGAAgCGcgCcgGGCUGCg -3'
miRNA:   3'- -CCGGa--------CCUCGCUUgGCuaG--UCGAUGg -5'
23093 3' -54.8 NC_005178.1 + 7903 0.67 0.556282
Target:  5'- cGGuCCUGGAGCu-ACUGcgCAGCaagggGCUa -3'
miRNA:   3'- -CC-GGACCUCGcuUGGCuaGUCGa----UGG- -5'
23093 3' -54.8 NC_005178.1 + 35969 0.68 0.54525
Target:  5'- cGGUCguaaaGGGGCGggUCGcaacGCUGCCg -3'
miRNA:   3'- -CCGGa----CCUCGCuuGGCuaguCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 37187 0.68 0.533198
Target:  5'- cGCCUGGAGgcCGAguuugacGCC-AUC-GCUACCg -3'
miRNA:   3'- cCGGACCUC--GCU-------UGGcUAGuCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 28432 0.68 0.531017
Target:  5'- cGGCCUGGcuauccaacaaugaGGuCGuaauCCGGUCGGCauccGCCa -3'
miRNA:   3'- -CCGGACC--------------UC-GCuu--GGCUAGUCGa---UGG- -5'
23093 3' -54.8 NC_005178.1 + 24170 0.68 0.523408
Target:  5'- -aCCUGGuggcuGGCGAugUGAUCcGCUugGCCa -3'
miRNA:   3'- ccGGACC-----UCGCUugGCUAGuCGA--UGG- -5'
23093 3' -54.8 NC_005178.1 + 2920 0.68 0.50191
Target:  5'- cGGCCaGGu-CGAGCCG--CAGCUGCUc -3'
miRNA:   3'- -CCGGaCCucGCUUGGCuaGUCGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.