Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23093 | 3' | -54.8 | NC_005178.1 | + | 29963 | 0.67 | 0.589727 |
Target: 5'- cGGCCUGGcGUGGAaCGcgCAGCccgGCa -3' miRNA: 3'- -CCGGACCuCGCUUgGCuaGUCGa--UGg -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 17292 | 0.66 | 0.613352 |
Target: 5'- aGGCUggugGGGGCGucagauagugguugcGCCGGaCGGCgggGCCg -3' miRNA: 3'- -CCGGa---CCUCGCu--------------UGGCUaGUCGa--UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 27989 | 0.67 | 0.578529 |
Target: 5'- cGGUCUGGAG-GAugCcGUC-GUUACCu -3' miRNA: 3'- -CCGGACCUCgCUugGcUAGuCGAUGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 25368 | 0.67 | 0.567378 |
Target: 5'- uGGCCgGGAGCuguCCGGUuugggggagaCAGCcgACCa -3' miRNA: 3'- -CCGGaCCUCGcuuGGCUA----------GUCGa-UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 7903 | 0.67 | 0.556282 |
Target: 5'- cGGuCCUGGAGCu-ACUGcgCAGCaagggGCUa -3' miRNA: 3'- -CC-GGACCUCGcuUGGCuaGUCGa----UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 10327 | 0.67 | 0.556282 |
Target: 5'- gGGCCgggcgcggaGGGGCGAAgCGcgCcgGGCUGCg -3' miRNA: 3'- -CCGGa--------CCUCGCUUgGCuaG--UCGAUGg -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 35969 | 0.68 | 0.54525 |
Target: 5'- cGGUCguaaaGGGGCGggUCGcaacGCUGCCg -3' miRNA: 3'- -CCGGa----CCUCGCuuGGCuaguCGAUGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 37187 | 0.68 | 0.533198 |
Target: 5'- cGCCUGGAGgcCGAguuugacGCC-AUC-GCUACCg -3' miRNA: 3'- cCGGACCUC--GCU-------UGGcUAGuCGAUGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 28432 | 0.68 | 0.531017 |
Target: 5'- cGGCCUGGcuauccaacaaugaGGuCGuaauCCGGUCGGCauccGCCa -3' miRNA: 3'- -CCGGACC--------------UC-GCuu--GGCUAGUCGa---UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 24170 | 0.68 | 0.523408 |
Target: 5'- -aCCUGGuggcuGGCGAugUGAUCcGCUugGCCa -3' miRNA: 3'- ccGGACC-----UCGCUugGCUAGuCGA--UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 7482 | 1.15 | 0.000287 |
Target: 5'- uGGCCUGGAGCGAACCGAUCAGCUACCg -3' miRNA: 3'- -CCGGACCUCGCUUGGCUAGUCGAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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